Array 1 334172-332057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYM01000007.1 Bifidobacterium animalis subsp. animalis strain LMG 10508 Contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 334171 29 100.0 32 ............................. CTGTATCCACGGCGACCCGTCATACACGAATT 334110 29 100.0 32 ............................. TGCAAGGCCGAGTCCCTTGCCTACGCCGCTGC 334049 29 100.0 32 ............................. CGCTGCGGGAGGACAGTCAGGGTCGTCGATTG 333988 29 100.0 32 ............................. GTTGCCCATAGCGCCTTCGATGGTCTGCGTCG 333927 29 100.0 32 ............................. TTCAGTATCCATGCGTCGCCCTTGTGGTGGCG 333866 29 100.0 32 ............................. AGATATGGGTCGAGCGCACGAGGTCTGCGCAG 333805 29 100.0 33 ............................. GTTCCGGCGCTAGCGCGGTATTAGCCGCTACAG 333743 29 100.0 32 ............................. GTGAGAGCGCAAGTCGGGTCAAGAAAACGTTG 333682 29 100.0 32 ............................. TAATACCCGTAATGGGAACTCGAATAGAAGAG 333621 29 100.0 77 ............................. GCCGGGGCGAAGGTGAAGACCTGGCGTGAGGTGTGCGGCAACAAGGGTCCTGCCGGATTCGGCGAGGTCGCCAAGAA 333515 29 100.0 32 ............................. GGTATTCGCTACGAGCTAGAGGGCGCGAAGAG 333454 29 100.0 32 ............................. AGCGAGAATTGGCTGGACGTGCAAGCGCGTGC 333393 29 100.0 32 ............................. ACCGAGTGTTTCATCAACTCAGCCAACGGATA 333332 29 100.0 33 ............................. TTGAGCGTGGGGTACTCAGGTATGCGATACATG 333270 29 100.0 32 ............................. GCAGCGTCAGACACGAATGCGCGCACTGTCAC 333209 29 100.0 32 ............................. TCACGCATATTACCTTGCGTGGCCGCTGGAAT 333148 29 100.0 32 ............................. CTCATGCCGTCCATCGCGTCCGCCATGCTCTC 333087 29 100.0 32 ............................. TAATCCATGACGCCGTTTTTATCGTTCTCCAA 333026 29 100.0 32 ............................. GACAAGCGTAAGGCAGCGAGGGGCGGGAAGTC 332965 29 100.0 33 ............................. GCACGCTCGGTTGCCGGCGTGTAGTTGAGTTGG 332903 29 89.7 32 T..GC........................ TCGGCATCACGCAACGCCTGCACCTGAGTCAA 332842 29 100.0 32 ............................. GCGTCCGGCATGCTCACCGCGGACGGCAAACC G [332833] 332780 29 100.0 32 ............................. GGTGGGCGACCAGCGCGAACGGTGCCGTCCAA 332719 29 100.0 32 ............................. AACCGAGCGTCCAACAGCACTCAAACCGATCG 332658 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 332597 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 332536 29 100.0 32 ............................. CCAACAGCAGCCCAAGGCACGCTCATCGAAAG 332475 29 96.6 32 ............................A GGTTTTCGCGGCCGCATGTGATGTGCGAGCCG 332414 29 100.0 32 ............................. TTGGGGACGGCCGTCGGCTGTGGGTCGTCGCT 332353 29 100.0 31 ............................. GGCGTCTTCGACGTGGCCACCGCCTTCATAC 332293 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 332231 29 86.2 118 ..........T...A.A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTACCACACCTAATCACGGTGATTG 332084 28 79.3 0 .......T......A.T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 33 29 98.5 36 GTTTGCCCCGCACAGGCGGGGATGATCCG # Left flank : TCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCGAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGTGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGACT # Right flank : GAGTGGTTCCGGCTAGCCTTAGCTGCCGGAACCACTTCGTCCAATCCTACCCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACGACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGTGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //