Array 1 20798-20230 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBO01000043.1 Pseudomonas aeruginosa strain 1631 1631_NODE_43_length_20937_cov_77.3253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20797 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 20737 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 20677 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 20617 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 20557 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 20497 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 20437 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 20377 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 20317 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 20257 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45829-47184 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBO01000004.1 Pseudomonas aeruginosa strain 1631 1631_NODE_4_length_365912_cov_83.139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 45829 30 100.0 37 .............................. TGCCAGGGTCGCCGAGACAACTAGACGACCAAACAGT 45896 30 100.0 36 .............................. TGGGTGCTCATCGTTGCATTCGGCGGTAACGACGGT 45962 30 100.0 35 .............................. TTCGCCATTAACGGAGGGAGGTCAGCTACCTGGGT 46027 30 100.0 36 .............................. TGCCGAGCGCGATAGCCGCCGCTGTGTGCGTAGCGT 46093 30 100.0 37 .............................. CTTGCTCACAATCCCTTCTCCTGAGCTTCCACTGTGT 46160 30 100.0 36 .............................. ACTGGAGGCTGGAGTCATCAAGCGGTGTATCACGGT 46226 30 100.0 36 .............................. TGCCGCGGAATCATCTCGCCGGCCGTCTTCGTTCGT 46292 30 100.0 36 .............................. CACCACGGCGGCCCAGCGCATCAGCCTGGACCAGGT 46358 30 96.7 39 ..........G................... TTTGCGTGATACTCGGTAACCGGCTTCGTCTCGCGACGT 46427 30 100.0 36 .............................. ATGTCCGACCTGGGCAAGAAACGCCGATTGCCTGGT 46493 30 100.0 37 .............................. GCCAGACCTTCGCCCTGTCGGGCAACGAGTTCCTGGT 46560 30 100.0 36 .............................. AGGTGGTCCGGGCGGTGATGGCGGTACGGGTGGCGT 46626 30 100.0 35 .............................. ATGACGCCCTCGACGAGAGCGATGGAGACCGTTGT 46691 30 100.0 36 .............................. CACCGGCTCCCACTTCACTTTAACGCCTGCGTGTGT 46757 30 100.0 36 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGGT 46823 30 100.0 37 .............................. TTCCTCACGATTGGTATCGAAGAAACCGGCTAAAGGT 46890 29 96.7 37 ....-......................... GCCACCTGCACCCGCCAGCCCAGCCTGGGCGGCATGT 46956 30 100.0 36 .............................. TCCGAACCCGCAATAGAAGGCGTCGACGCCGCAGGT 47022 30 100.0 36 .............................. CAAAGCTGGACCCTGGCGCGGATCTGCATGTCTCGT 47088 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 47155 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.9 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGATAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCCGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGTGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGATCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //