Array 1 5529-4437 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJB01000023.1 Clostridium botulinum D/C strain 1277_DC 1277_S1_L001_R1_001__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5528 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 5462 36 100.0 30 .................................... TTAGCAGAAACTATACTAATGAACATATGT 5396 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 5330 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 5264 36 100.0 30 .................................... AGTACTAAAGATGCTAAATCAAGAATAAGG 5198 36 100.0 30 .................................... ATTGTAGCAGATAGTGCTGAACCTAGAACA 5132 36 100.0 30 .................................... AGCTACAAAATAGGGTGTACCAAAAGGGGT 5066 36 100.0 30 .................................... GTTCTTATAGGAGATTCTTCAGCACTATAT 5000 36 100.0 30 .................................... GTAAAGATGGGTTTAGAAATGAGTGTAAAT 4934 36 100.0 30 .................................... TATTACATTAAAGCAACTGCAACTGTTACA 4868 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 4802 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 4736 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 4670 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 4604 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 4538 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 4472 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : ATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 224-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJB01000011.1 Clostridium botulinum D/C strain 1277_DC 1277_S1_L001_R1_001__paired__contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 224 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 291 29 100.0 36 ............................. AATTTTCAATAGGAAGGATGATATTATGAGTTTTTA 356 29 100.0 36 ............................. TCTATTAATACATCTATATATTGCATGATTTCTTTG 421 29 100.0 38 ............................. TTCCAAATAAGTTCCTTGGGCATGAATAGCTTTTTCAA 488 29 100.0 37 ............................. AATAAATAAATATACAGACAAAGAGGGAAAAGACAGA 554 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 621 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 690 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 757 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 822 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 888 29 100.0 37 ............................. ATTGAGTAGATGCCCTAATTTATCTTGAAATGTACTT 954 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 1019 29 100.0 38 ............................. TTATGTATTAAAACAACTACTGCTTACGCTGAAAGCGA 1086 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 1152 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 1216 28 82.8 0 ................TA.G.-...G... | T [1240] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AATTTTAATTTATGAAGATCCTCTAACTTATCTATTTGTATTTGAGAATTAATATTCATTTGTATAATCATAATTACCTCCAGTTTATTAAATGTTGGTAATTATAGTATTATACATAAATCTAATTCTTACATCCTTAGATGATCACTTTCTTGCATTTCCATAATAGCACTTATAATATGTAAATGTTATAAGCAATGGAAGTAAGCAAGTGCAATTAAAAG # Right flank : AATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATATAATGTTTTCGCTTAAAAAAACCATAATATACAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //