Array 1 368-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESI01000007.1 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1 isolate FDA_2010_144_Black Pepper-6 SEEM971_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 306 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 245 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 184 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 123 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTCACCTTTCCCCACAATGTCAGAGGTTATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249606-248112 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESI01000002.1 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1 isolate FDA_2010_144_Black Pepper-6 SEEM971_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249605 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 249544 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 249483 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 249422 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249361 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 249300 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 249239 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 249178 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 249117 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249056 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 248995 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 248934 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 248873 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 248812 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 248751 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 248690 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 248629 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 248568 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 248507 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 248446 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 248385 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 248324 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 248263 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 248202 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 248141 29 93.1 0 A...........T................ | A [248114] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266074-265741 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESI01000002.1 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1 isolate FDA_2010_144_Black Pepper-6 SEEM971_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266073 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 266012 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 265951 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 265890 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 265829 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 265768 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGCCAGCGGGGATAAACCGGGACAGGTAACAGCGTGCTTGGTTCTGGTAA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //