Array 1 374217-374857 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYG01000050.1 Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1585 SEEPB585_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 374217 29 100.0 32 ............................. CCTGTGGGGCCGCCGCGAATTTTCAGCAGAAT 374278 29 100.0 32 ............................. TGAGTAATTATATACACAACAAATTCAGTGTC 374339 29 100.0 32 ............................. GGCGGGGCGCTGGGGTTGCTCGGCGGCGTGCC 374400 29 100.0 32 ............................. GATTTCAGGGTTATCCTGCAACCATTCCCTGA 374461 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 374522 29 100.0 32 ............................. TAACAGTATTGAGTTAACTCTTTTGCATGGAA 374583 29 100.0 32 ............................. GGCGCCCATCACGCGCAAAATTCGCTTGTCGA 374644 29 100.0 34 ............................. CGATTTTTTTTCGCACCGGCTGGGGTTCGCTTGC 374707 29 96.6 32 ............................C CTGATGGAGTTCACGACAGGCAGCATAAAAAT 374768 29 100.0 33 ............................. CGCAGTTACAGACGTACTGGGCTGGTGAGGATC 374830 28 96.6 0 ..........-.................. | ========== ====== ====== ====== ============================= ================================== ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : ATCCTTATCACTCCCAAGAGGCGTACACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12281-10053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYG01000020.1 Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1585 SEEPB585_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12280 29 100.0 32 ............................. TCAGGGGGGAGGATTTTATAGCCGTTGAAATG 12219 29 100.0 32 ............................. GGCCTGATTGCGTAATGTTTGGAGAGTATTAA 12158 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATAGTAACGAC 12097 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12036 29 100.0 32 ............................. ATCCGCCCCCGTTCCGTAGTAGCCGCCCAAAT 11975 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 11914 29 100.0 32 ............................. AGAGGAAAGGGGGAAAATTCAGAAATAATTTA 11853 29 100.0 32 ............................. TTCCCGCGTGCAATGTGGATAACCTTTATTAG 11792 29 100.0 32 ............................. AAGGTGTTTCCGCCCGCCAACGCCCCACTTAG 11731 29 100.0 32 ............................. CGCGTTTTCGCCCCGGAGACAATACCAAAATA 11670 29 100.0 32 ............................. TGTTAACACGGTGTACAGGGGGCCACCGTGGA 11609 29 100.0 32 ............................. GAGATAGGGTTTGCAGAAAATGAATGTCTAAC 11548 29 100.0 32 ............................. GATGCAGAAAACCCCGCCGCCAGTAAACTGGC 11487 29 100.0 32 ............................. AGAGCTGATCGCCACGGCGTTTAAAACTGCGA 11426 29 100.0 32 ............................. CTTCTCGCCTGACGCTAGTTTTTCAGCATTTT 11365 29 100.0 32 ............................. TTCGCCGCGCCCGGGCGCAGAACATGGGCGAA 11304 29 100.0 33 ............................. TAGATCGTGATGCGACGGTGGCTGAGTTAAAAC 11242 29 100.0 32 ............................. CCAGTGCTGTTATCTTCTACCTCTCCCACCCA 11181 29 100.0 32 ............................. AAAAAATCGGCGTATCTCGGCAGTACCGGAAC 11120 29 100.0 32 ............................. TGCCGGATTGCCACTGGCGAGCTGTTCATTGG 11059 29 100.0 33 ............................. TTACCGATGAGGTTTGCGGAAAACGCCCCGAAG 10997 29 100.0 32 ............................. ACAACAGAACTATAACGAAATAAGGGGTTAAT 10936 29 100.0 32 ............................. GATGGAAAATCACCTTGCTCATGATTTGAGTG 10875 29 100.0 32 ............................. CGACTGCTCAAATTTCATAGTTGTTCTCCTTC 10814 29 100.0 32 ............................. TTTTACACGCTGGCGGAGGGCGCATCATATCC 10753 29 100.0 32 ............................. CTACGCGGTAAATTCTGGTAATTTCACTGTTG 10692 29 100.0 32 ............................. GCCGAACGAGATCCGATCGCCGTCCAGCTGGG 10631 29 100.0 32 ............................. ACCAGCGTGATCCAGATTTCCTCTACAATTTT 10570 29 100.0 32 ............................. ATTTCAAACACTCAGGGTCTGCCAGCGCCTCA 10509 29 100.0 32 ............................. TGCTGGTGTTCGCCGCCCAGTTACGCCAAGGA 10448 29 100.0 32 ............................. TACGCGCCAGGCGCAAAGGTGGCTCTATCGTG 10387 29 100.0 32 ............................. ACCGGAATTGATGATTCACGCGTAATTAATTC 10326 29 100.0 32 ............................. CGGACTGACGTCGTTCTCGTCCGTGTAATATT 10265 29 96.6 32 ............................T GTTGCTGCCAGCAAGGTTGAAACCAGCATTCC 10204 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 10143 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 10082 29 100.0 0 ............................. | A [10055] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29981-28976 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYG01000020.1 Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1585 SEEPB585_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29980 29 100.0 32 ............................. CGTGGCTCGCTGGCGTCCACCAGTGCGGCAAT 29919 29 100.0 32 ............................. AGGCAAAACCACAGGACGGCAGTACCGTTAAT 29858 29 100.0 32 ............................. TGTTAACTGCAACCAAAAAGCATCGTGTACTG 29797 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 29736 29 100.0 32 ............................. ACGCTTACGACACGTTTCATACCGTGCTGAAC 29675 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 29614 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGTTGGT 29553 29 100.0 32 ............................. CACGTTTCCAGCGCGCGCAGTACGTAGGCGCT G [29536] 29491 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 29430 29 100.0 32 ............................. AAGCGGCAGCTTTGCCACTTCCATGTGGCAGT 29369 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG 29308 29 96.6 32 .....T....................... ATTCGCTCATCCGGGATATTCAGAGTACGTTC 29247 29 100.0 32 ............................. CTTATTTGCCCGGATAATTGAGCCATAAGCAT 29186 29 100.0 32 ............................. GCGGCAGTATGACGTACCAGCTTATCTACGTT 29125 29 100.0 32 ............................. GTATCGAAACGGCGCTTGCCGCGTACCAGATT 29064 29 96.6 32 ............T................ GCTCACAGAGTTACATCCTCGATTACGGTCTA 29003 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGATCCTTATCACTCCCAAGAGGCGTAACCATT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //