Array 1 18730-17243 **** Predicted by CRISPRDetect 2.4 *** >NZ_APTD01000108.1 Neisseria meningitidis NM606 gnm606.contig.107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18729 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18663 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18597 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18531 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 18465 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 18399 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 18333 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 18267 36 97.2 30 .....................C.............. CCAAATAGAAATACATACGCCGAGTAATTA 18201 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 18135 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 18069 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 18003 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17937 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17871 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17805 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17739 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17674 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17608 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17542 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17476 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 17410 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 17344 36 100.0 30 .................................... ATGCAATAAAAGCCATCGACTGCCCAAAAT 17278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //