Array 1 40411-37937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000011.1 Anabaena lutea FACHB-196 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 40410 37 100.0 38 ..................................... TTGTGAAGTTGCTATAGTGTGATACCCATAAAGCACTC 40335 37 100.0 38 ..................................... GATTGCATAGAACCCATACCGCTTAAACTTAGATTTGG 40260 37 100.0 42 ..................................... CACCTTGTTCATCATCGGGCTTGAAACAATCTTAATAACCCT 40181 37 100.0 37 ..................................... AACATCATAGGTAGTGCAACATTTTTTATAAGCCATG 40107 37 100.0 39 ..................................... AGGAGCGACAATAGGTATTACCATCAATGTCAACACCTC 40031 37 100.0 37 ..................................... GAGTATCCCGCAATCTTCCAAGCTACATCAAAATCAA 39957 37 100.0 37 ..................................... CGCTAAATTTAGAGGCGAACTCCAATAAACTGCCCAG 39883 37 100.0 38 ..................................... CGCTGATATCTCACTAGCAAGCTTGGATAGATACTCTG 39808 37 100.0 36 ..................................... TGGGTAGACTTTCGTACAATGAATTGGCGAATACCC 39735 37 100.0 35 ..................................... TTTTTCTCTTTTAATTTAATACCGTTCGTTGGTTT 39663 37 100.0 35 ..................................... GATAATCAGATTTCCAATTACCATTTCCCTGTAAA 39591 37 100.0 37 ..................................... ATTGGAGGGTGCAACCATGTGGCAAAGGCAGAATCGA 39517 37 100.0 35 ..................................... TCTAACGGCTGGCTTTAGTCTTTCAATAGACTGAG 39445 37 100.0 34 ..................................... TTAAAACTTCTTCCTCTGCATTTTCTTTGACAAT 39374 37 100.0 39 ..................................... GAAAGTGAGAATTTTGGCGATCGCATTAAGAAGCCGCGC 39298 37 100.0 33 ..................................... TTCTATTTTCTTTAGGTCGTGGCATTTTCATAT 39228 37 100.0 40 ..................................... TAATGAATTTGCTATAGTGTGATACCCATAAAGCACTCGC 39151 37 100.0 34 ..................................... CTACCAAGGAGACAAACTTCAGGAGCTAATTAAC 39080 37 100.0 39 ..................................... GAGCTAACAGAAACCATGACGGTCGATATGTTCGGTGGT 39004 37 100.0 36 ..................................... TACGTAGAGCGTGTACCCGATACCCCCAATTAGAAA 38931 37 100.0 40 ..................................... TTCCCAGATCCTTGAGCGCCAATTAAGTTTAGAATTCCGG 38854 37 100.0 36 ..................................... TCGGTACTTGCCGCCGAAATAACGCAGTAAAGGAGG 38781 37 100.0 38 ..................................... AATGTTGTATTTAAGTAGGCAATTTCTTGAACATTTGG 38706 37 100.0 35 ..................................... TAAGTCTCGAAAGTCGTTAGGATCGATGATTTTGG 38634 37 100.0 34 ..................................... GGGGGGACTGCTTTACTAACTTCGGGGAAAGTAA 38563 37 100.0 37 ..................................... TGCATTGTGTAGTCTACTGAAGTTAGATTTTGACTAA 38489 37 100.0 38 ..................................... AACAATATAGTTGTCAAGAGTATTAATAGCTGACTTGA 38414 37 100.0 36 ..................................... AATTCTTCAATATTCATTAAAACTCCTCCATTTGAT 38341 37 100.0 41 ..................................... ATCAAAAAGTTTTAAAGAAAAATAAACCGGGCCAATGTCGA 38263 37 100.0 38 ..................................... CGGATTTTCCAGTACTGGTTACACACCTACCGCAATTA 38188 37 100.0 35 ..................................... CAAATCCAAAAATCAATTGATTTTCTGCCATAAGT 38116 37 100.0 34 ..................................... TCCCTGCCATCTTGAACTAATCCTGAACTAAATT 38045 37 100.0 35 ..................................... TCCTCCCGTAGTATATTGACCTCCCATAAACCAAA 37973 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 34 37 100.0 37 GTCTCCACTAACCATGTGGGGACGCATAATTGGAAAC # Left flank : AACAGAAAGGAGAACTTAGAGGAAAGCTACTAGCAGTACCAGCAATGTTAGCTGCTGGGTTAAGTATAGAACAGATAGCACAGGCTTTAAGTTTACCTATAGATGAGGTGAGACAAGCTGCACAGCAACAATCTTCTCGTTGATGATGAGATGCTTTAAAGGAACTACTGCACGATACCTTCGCGCGCTTCATCTCTAAAACTCACCCAATGCGATCGCTAACGACATCACTTAAAACACTACCTAAAACTGCGCGACCCAGGGGGTGTATTTATCGAACGCTTGTTATATAACCTCTAAAGGCTTATCAGCTATGGCTTTGGAGGTCTTTAGGAAAAAAAGAGGCTCGCGCAAAGTCTGTAATCTATGCCAGCAAAGGGTTTGAGGCATTTTTCATTAAGGGAGGACTTGACAAGCGATCGCTCAAACGGTACTTTTAAGTTTCATCCGCGCAAATGGGTGTCCAAAGCCTTGTCTATCAAGTCTTACTGACCCCCGCT # Right flank : TAACAAAGGCATCATCAATCTGCTTTCAATACCTTTGAAGTAGTTAATATTAGTGAAGATATAACGACTTCAAAGGTAGAAACTCCTGTAAGTGAAGCAGAACGAGTTGGTAGTAACTTAGAAAAAGCTACTAGAACTCGCAGAGAATCAAAGCAATCTGTTTAAAAAAGATGAACTAGCGGGAAATCCTGTTATTCGTCAAAATGTATTTGACAGACTACTAGCTTTCCTCTGCTGCTGGTAAGGGAAAGATTTCTCCAGCTAAATAAGCGGGAAAATGCTTTTGGAAATATAACCAAGACGTTATATCTTCCCCTTCCATAAAGGCTTTTGGAGCTTGCTTATACAAAGGAACGCGAGTATTGATTTCTGCTTGTAGAAGTGGGGGTAATTCTGTAAAACTGCGGACTTTGCTGCCAGTAGCACTGTAAATAAGATAACCGGGGCGGTCGCCCATTTTCATCCAAGGCAACCATTGACCAATTCTATCCCAACTTAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGGGACGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 53024-51108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000011.1 Anabaena lutea FACHB-196 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 53023 36 100.0 37 .................................... GCTCATTGTTCTGAACCTGTCATTATTCAAATGTAAC 52950 36 100.0 36 .................................... GCTTGGTCAGCATGGTATCCGCCAATAAAGTCAACT 52878 36 100.0 35 .................................... ACGAAAGAACAATTGAGGAGGGACTACAGTATAGC 52807 36 100.0 37 .................................... AGAAGAATGGGGGTTAGTCGTTGGCGATTTTAATCGC 52734 36 100.0 31 .................................... GTTTATGTCTGTTAATGCTCTAATCTCGTAG 52667 36 100.0 38 .................................... GTTAAAAAACCAAAAGCCAAAACTACCAACGCAAGAAA 52593 36 100.0 29 .................................... GCTGGTTCTTGATACTGATCTTGTGGTTC Deletion [52529] 52528 36 100.0 33 .................................... TTTTACCAAGTCCACCATAGATAGTGTCATTAC 52459 36 100.0 35 .................................... GATTAAGCGAGCAACTTCTGCGGGTTGTGCGTTAA 52388 36 100.0 37 .................................... AAAGATGGTTGCGTTAGAAAGACGAAACTGATGCGGA 52315 36 100.0 34 .................................... TTTCGCAGGCGTTCGCGGGGTCTGTGAAGATCGC 52245 36 100.0 39 .................................... TGTTCTTGGTACCCAGTTCCACTGGTGGAGGGTTGTCGG 52170 36 100.0 37 .................................... ATCAAAAAAAGGGGAGAACAAATCGCTGCCCCCCTTT 52097 36 100.0 35 .................................... GCTGTATCATGCGCGCAACTATTTCTGCCATTTGA 52026 36 100.0 42 .................................... TTTCAACCCTTTGGGGGTCTTCTTGGGTTGCAAAAATACGGT 51948 36 100.0 37 .................................... CACAGGATAGAACGTTTCTGGGTCAATCCAGTTTGCT 51875 36 100.0 35 .................................... TTCATTTTGTGCTTCGAGAACAATTTCTTCTGTAT 51804 36 100.0 33 .................................... AAAAGCAATCATAAACAATCCTTTGCTTGGTTT 51735 36 97.2 40 ..................T................. CAGAACTAGAAGAAAAGCGTTTTCTTCAACTGGGGATCTA 51659 36 97.2 38 ..................T................. CTTTTTCTACGACGGTGTCAGAGATGCTATTAAATTTT 51585 36 97.2 35 ..................T................. TACAAAATTTTTGTAGGTTAAAAACTGTTTGAGTT 51514 36 97.2 36 ..................T................. GCTAACTGATTCTCGCCTTTGACGGAGGGGCTTCCT 51442 36 97.2 39 ..................T................. ACGTTTTCGAAAGTCATAAGACGTCGGAAAATAAAGAAT 51367 36 97.2 41 ..................T................. AACAAAACTCCCTCCGAAGAAAAACGAAAAAAACATAAATA 51290 36 97.2 38 ..................T................. ACGAAATAAGTTAAATGTCATTCCATTAAGTAACTCTA 51216 36 97.2 37 ..................T................. CCAGTTGCGTTGGTTATTGGCTTGTTGTCAATATAAG 51143 36 97.2 0 ..................T................. | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.1 36 CCCCACCGATTGGGTTAAATCGGAATAATTGGAAAC # Left flank : TCGTCAGTGGAGACGATTTCGCAATTTCCTGTGCTGGATAGGAGTTTGGCAAAGGTTGATTTACCGCTTCCTGGTGTGCCGATGAGAAAATGAACGATGATTGTTTTGGAGTCGGTTTTAGCTGCCTGTTGAGTTTTGCGTCGAGATGTTGACATATTAATGTATAATTTTACTTAATTAGTTATATAGTTGGAATAAGTGATCATTTTACATCGCTTGTGCGAATGACTAAGAAGATATTTTGTCAACATAAGGTTCTATCAAAGTCTTTCTGTATCTAGGTTGGAGGCTGTTTGAAGAGGTTTTTGTATCATGACTATCGACACACCCCGGCAAATCGCCCAAACCCCTATTCTTTCGTTGAGGTGTGTCGATAGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGACTAATTTTTTAGCTGGTTTTACAATCTTTTTTAGAGGTGCGTCGATTTGTGGTTCCAAATCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : TTGTTTGACAATTATAGAAGTTACGCATTGACAAAAAACATCAAATATGTGTAGATGTGAAAAACACATTTATCGTAGGGGTTTAGCAGTGCTAAACCCCTACCCCACGGTTGATTTATCGGCAAAAATAGAATTAATTGCAGCCGGAAATAAGGTATTTTAGTGAACGCATATCACGATTGATTTGTACAGTGCGTAAGTCCTAAATTAGTAAATTGAATTGTAATTAGAAAATCAAAAAATGATTCGTTTAGTTTTTGTTTTTGCTGTTATTTATTTATCTTTTTCTTGTTCAGCACTACTAGAAGAAGAAAAAACTCAAGAAGTGCGACTATACTGCACTAAAAACACTTTTTCCACAATTAGCATTACCTGGAAGAGTAATCACGTAAAGCACAATCGTTTTGTGAACAACAATTGTTCCCTAAAAACTCCCGTCTATGTTGGGAGATTCTTATTTTTTAATAGCTTAAAATCTACCCAAGAAGAAGTTATTACAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGAATAATTGGAAAC # Alternate repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 76248-80906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000001.1 Anabaena lutea FACHB-196 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 76248 36 100.0 37 .................................... GACTATATTGATGATGCCAAGAATAGGTGGGAAAGAC 76321 36 100.0 36 .................................... GTGCTTCTATATCCTACAGAAATTCCCCTAACGCCA 76393 36 100.0 42 .................................... GAGGATGCTGGCAACGCTCTTTTAAAAGCATTTGGCATCAAA 76471 36 100.0 43 .................................... GCAAAATCTCACCTACTATTCAAATACTTCTCCCATTTATCCA 76550 36 100.0 37 .................................... GTACGAGTCTCCCACGCCGGACATCAAATACTTTGAG 76623 36 100.0 36 .................................... GGAGTTTTAAATCCAAACCAAATTCAGGATTATTCC 76695 36 100.0 43 .................................... GACATGAGGTTAATATGTTTCAGGCGTTTGACCCGCCATTGAA 76774 36 100.0 38 .................................... GTTAGCCATGAATTTAGAACAGATAGGAGCGATCGCTT 76848 36 100.0 41 .................................... GTACCCAATTCCTATTGACTATATTAGAGATATTGGAGAAG 76925 36 100.0 42 .................................... GATTAGCGATCGCCTCCAAAAACTTTAATAATTATACTTCAA 77003 36 100.0 40 .................................... GTTTATCTAGACGCTCAATCTTGGGAGGAGCGTAAAAGAA 77079 36 100.0 36 .................................... GGATAAACTCTTCTTTTGTAATTTATAAATACTGTA 77151 36 100.0 34 .................................... GACCGCCAATAGTGCGCCCAACGCGCAACTCAGA 77221 36 100.0 32 .................................... GTTGCAATTGCTACCCGAAAATTTTCCAAAAC 77289 36 100.0 35 .................................... GGATAGTGTAAGCTCTTACTGCACAACTCGCCCTG 77360 36 100.0 39 .................................... GTGAAACGCTTGATTGATCGCAAGAATAAGAAATTGGGA 77435 36 100.0 37 .................................... GCGCTAAGAAATTTGATTTCAGAAGTGAGAGATTTAC 77508 36 100.0 41 .................................... GTCGCTATCAAAACCAGATGTATTCTGAATATTTACCGCAA 77585 36 100.0 37 .................................... GCCCGAAAACTTATGAGTACTCAATAAGCGATCGCCT 77658 36 100.0 43 .................................... GTTTTCACCTTTAAAATATGAAATTCTACCAGATTCGGCATAA 77737 36 100.0 37 .................................... GTTAATGCCTTATTTTCTAACTAACTGTCTGTTAACG 77810 36 100.0 36 .................................... GCTGGTAGAAAGCCGGGGTTTGGTAGGTATGGTAAT 77882 36 100.0 35 .................................... GACTTGGAAAAAGGGACTTTAGCTATTTGGCTCGC 77953 36 100.0 35 .................................... GAGTACCTGCTAACGGCTACAAGTCAGCAAAAGGA 78024 36 100.0 36 .................................... GGAAAAAAGAGAGATGGATAGTAAAAATAACGTTAA 78096 36 100.0 37 .................................... GGCTTTGGCTTCTTCGGTTGCAGACTTGTAATCCGCA 78169 36 100.0 38 .................................... GTGCTGATGAAATAGAGCAAGGTTTGGATTACTTTGTA 78243 36 100.0 35 .................................... GATAAGATTTCTTGGTTAATTCGCCAAACCTTTTA 78314 36 100.0 36 .................................... GTAATTCGTTAAGACTTGCTTTATCAGTTGAATACT 78386 36 100.0 39 .................................... GGGAAAGCGATAGCAAGATGACTAAATCAGAGGCTGTAG 78461 36 100.0 34 .................................... GTTGCATTTCTATTTTTTCCTCTTTCGAGTAATG 78531 36 100.0 40 .................................... GTCTCTAGTATTTGTAATTCAGTATCTCCACCAAATCCTG 78607 36 100.0 35 .................................... GGTTTATTCTTTCATCAGGCGTTCCAGCGTCTAAA 78678 36 100.0 40 .................................... GGTCAGGCACGGATGCTGGTAAAGAGCCGACTCTTTTTAA 78754 36 100.0 34 .................................... GAAATAATCGGCGTTTCAGTTAAGCACAGTGAAA 78824 36 100.0 35 .................................... GCTTCCGAATCTAAATTTTTTGAGTATAGGGCAGA 78895 36 100.0 34 .................................... CCAGCAAGGCATTAATAGACGCGTTGAACAAAAA 78965 36 100.0 37 .................................... CCTAAAAGGCTTAGTTGCTTCTACTAATGGATGAGAA 79038 36 97.2 34 .................C.................. CGCAGTATCTTTCTCTTGCCCAATTAAAAACCAA 79108 36 100.0 35 .................................... CTAATTCCTGATCTGAGCGATCGCCCACCCATCCC 79179 36 100.0 36 .................................... CGGACTGACCTTCTTTGATGCCATCCTTAACAGCTT 79251 36 100.0 33 .................................... CTGACGTTCGGCACGACAAAGTATTGAGCGCAG 79320 36 100.0 41 .................................... CGCACGCTAACACTACAAGAATGGTAACTAAAGCATTAGAA 79397 36 100.0 41 .................................... CGTTTACCAAAACTTCAATAAATGAAAATTGTCCCGAATTG 79474 36 100.0 35 .................................... CATGACACATAACAACACTGCTATTGGAACTATTC 79545 36 100.0 37 .................................... CTAATTAATACAATTCTTAATCCTAAAGTTAGACCTA 79618 36 100.0 36 .................................... CAGCTTCTTTTCTTGCTTGCTTAATACGATTAGCAA 79690 36 100.0 37 .................................... CCCCGAAAACTTATGAGTACTCAATAAGCGATCGCCT 79763 36 100.0 37 .................................... CGGAATTTAAAAACGACCGCATTAATAGCGATCGCTT 79836 36 100.0 36 .................................... CTATGTAGGTGATGATTGTTGCATTAGATGTACTAT 79908 36 100.0 35 .................................... CGCTTATTTTCAGGAAGACGTGATAGCCACGGCAT 79979 36 100.0 37 .................................... CTATCTCTAAACGTATAACGATTTTGTATTACGTTTT 80052 36 100.0 40 .................................... CTTTTTGGATATTGATATCCACTATTTCATCAAGAGGAAA 80128 36 100.0 41 .................................... CAGTAATCGATGATTTATCTCGTTGGCTATTCATCTGTGAA 80205 36 100.0 39 .................................... CCAGCCATGTCAGTACTTAATAGTTAGATTATCTAATTA 80280 36 100.0 35 .................................... CGGGAATAAATAAATTATTCCAGAAATAAATTAAA 80351 36 100.0 38 .................................... CTGCTGAAGTTAGATTTTGACTAAATCGCTAAACCCTA 80425 36 100.0 40 .................................... CCAAGAATCTGGAAACGATTCCGAAATCTCGGAAAATGAG 80501 36 100.0 41 .................................... CGACGATATCATCGATGAAGCTTGGGATGACTTCTACTCCT 80578 36 100.0 34 .................................... CAGTGATTCTCTCGCGGCATAAGAATCCTGAATG 80648 36 100.0 35 .................................... CGTAAGTCCTTGGTCGTATGTGAATACAGCCAAGT 80719 36 100.0 37 .................................... CTATGCATCCGCTCTAGCTCTAATTTTCGACCTTCTT 80792 36 100.0 43 .................................... CCTTTTCTGTAAAATTACTGGAAAGGGAGATGTGGCATCTTCA 80871 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 64 36 100.0 37 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAA # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGTACTAAAATCCATAATATCCTCAAGTCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGACTGAGACTCAGTATGCTAAACTGCGATCGCGCCTCAATAAGCTGATTAAGCCGGATACTGATAGCATTCGCTTTTATTTCCTCTGTGCTTGCTGTTTTGGTAAGGTGGAACGAATTGGTGGTGAACAACCCCTCGATACGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATCCGGTTTCTCAAAAAACGCCTGAAACCATTTCTACATAAGGCTTTGCTCGCTTTTTTCTACCCCGACCCCTCGCGCACCTTACACAGTAAGGCTTTCAGCGTTTTTCACTCTTGACACGATTCCTGAAATGGACTATGATGAGAGCGCTCGCGCAAACGAACCTTGAAAACTACATATATATAGGCTTTCGGGCTGCCGCA # Right flank : ACCTCACCTTCCCTATCTTCAGAATTTTCATACCAAGCAATGTTGAAATTTTATTCTGAGATGAGCGGACGAACCACCGAGGGAATTAGTAGTAACTGAAAAGCTAACAATTACTACCAATTACTCACTTATACAATATGACTATATGACTATTTTGGAAATATCAATAAAAACTAGTAAGTACGCACAAAAATAAAGCTTCAGTCCACTCAACAACTGCACCATAAGTATCTCCTGTATGTCCACCTAACTTATGATTAAACCAAGCTGCTGTTGAACTAGAAATCACAGTTCCAATCATCATCATCCCCATAGCCAAAGCTAAATTCTGGGGATTAATTAACCAAACCAAACCACTCAAACCCAGCAGCAAAAAAAAGCTTGGTAACACATCCTGATAAGAACGAATCGCTTGTTTATGAAATGCACCCTTACCTGTAGGTTTTAAATAAGGATAAAAAGCGATCGCAACTTGTTGTCCCCAACGTCCCCACCCACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 249130-249973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000001.1 Anabaena lutea FACHB-196 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 249130 23 100.0 51 ....................... AATGTTTTCTTGAATTAACTAAGGATGATTTATTTGCGTTTCCACATAACT 249204 23 100.0 55 ....................... TTTAAAAACTCAAAATTGGAATATTGTAGAACTTTGTCCAGGTTTCCACATAACT 249282 23 100.0 50 ....................... GGATCTACATCGCCATTTCTTATAGCCTCTGCCCTCGTTTCCACATAACT 249355 23 100.0 51 ....................... TTAATTTCGCCAGCGAGAGCGATCGCTATTTCTGCGTGTTTCCACATAACT 249429 23 100.0 49 ....................... ATTTCTTCGCCATTATCAATTCTTCTGGCTTTGACGTTTCCACATAACT 249501 23 100.0 54 ....................... TTGGATTGTTAGAAATTGGCAGATCAATTGAGCAGTCTAAGTTTCCACATAACT 249578 23 100.0 50 ....................... AGAATATATTACACAAAAGATGATGGCTCATCTGCCGTTTCCACATAACT 249651 23 100.0 53 ....................... TAGGAATATAAGGTATTTCAGGAATAGGGAAATCCAAGAGTTTCCACATAACT 249727 23 100.0 54 ....................... ATACTACTAACAACGAAAAAGAATTAACTGATGAAGAGAGGTTTCCACATAACT 249804 23 100.0 50 ....................... ATATAGCTGCCTTACATAGAGTGTTTACTAAAGCTAGTTTCCACATAACT 249877 23 100.0 51 ....................... AGCTAAGGAGACTAGCTCAAGTGAGCCGCCACCACATGTTTCCACATAACT 249951 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================= ================== 12 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATTCAGAACAAAAATCAGAATTATTAAAAGTTTTTGCCAATCGTTCCCCAAAAGATGCTTATTATAGTCTTCAATATCGACATGGAGATAATAATGTAACTATGCGTTTACGAGCTTGGCGACCGAAAGTAGAAATTCTGTTACCTTATGATTTAAGACAAAGAGTAGCTGCTGATATTACCAAAGAAATAGGGCTTTATCATATATAATTAGTCAATAATGAATGCTTCACTATTTGTAAACAAATAAATCTTGACAAGTAACTTGCTAAATTTTACTCTTAATATAAGGATAAATTTGGCAGACCTAGAGCGAGGTCAAAAACCCCAGGGATTCGCCAAATCGCCAGAACCTTGACAAATAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCGCCCAGATTATGTTTCAGATAGCGGGGTTTCCACATAACT # Right flank : CAGAGTAAAATATTGAGCATCAAATAATGTAGCATCAAAAAAAAATGCCAAGAGCAGCTACATCCAGCAAACGCAAAACCCCATCAAAAAACACCCCTCTAGTATGGGCAGATAACACCGAATTAGTTGGTTTAGTCTTTGACCTAGAAGTAACCAATTCCACATTCCTATACTCGCAATATACCATTGGACTTCATGCTTGGTTTCTAGACCAGGTGCGGCAAATTAACCCAGACCTTTCAGCATATCTGCATGATGGCGAATCAGAAAAACCTTTTAACATTTCTGCCCTCGAAGGTCAATTACTTCCCACCGGAAAACAACTACAACTACAAGCAAATCATATATATCGTTGGCAGATTAACGCCATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAAACCAACCTCCAACTACTTTGAAATTAAGGGATGCTTCCTTACAAGTAAAACAGATAAGTATTGTCAATTCACCAACTACTTATAGCCAACTA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 440720-441191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000001.1 Anabaena lutea FACHB-196 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 440720 37 100.0 36 ..................................... GTCTTAATATTTAATCCATACCCCTGACGACATAAT 440793 37 100.0 33 ..................................... ATAGCATTAGTCTCTATTCTCCTTTATCAAAAA 440863 37 100.0 33 ..................................... AATAATATTTGGATTTCTCTCATCTTGCAAAAA 440933 37 100.0 36 ..................................... CATTCTACTAAAGTAGGCTATTCCTTTACTAGTGCT 441006 37 100.0 37 ..................................... AATGCGGGATACGTTGGGCGATCGCATTTGATTTGGG 441080 37 97.3 38 ..................................T.. ACTAAATCCGCATTGGATGCGATGAAAAGGTTAGAAAG 441155 37 89.2 0 ................................T.TGT | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 98.1 36 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : TTAGTTTACGAATTCGAACCTTGAAAATATAATATGGATAGAATAGCGCCGCAGTTCATGTTCTTTTGAGCCTCTGTACTGTGAAAAATCTGGGTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGGATTCTATAGATGGGATAGGTGCGCTCCCAGTAATAAGGAGTAAGGCGTTTAGCCGTAGTCGTTTTTATAACGGTGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATCTTTTTTTTTGGCAAACCATAAGCGGGGGCAAAAACCCTGGGGATCTGCCAAAACCTTGAATCCCTTGTCCAGTATTAATTTGACTCATTTGAAGAGTGATGAATATCCTCCATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : TCTTTGGTTTACACGAATTTTGTGACAGAGGAGAGGGTTGAAAGGTGCATCCGACTTGTAAACGTATTAAAACCTACAAGCATAGAACGAAACATATATATCATTTATCACGATGATTAAAATGTAACAATTGGGCTTTGCAAAAATAGTCCTTAAATATATTTGCGAATGTACACTACCTTAAACTTCGACTTAGGTAGGCACTGCGCTCAAATTGTTCAAGTTTTTCCGTATACTAGAAGTGTAGTGGAGTCAACACCAAATCAAATCGGCGACATTAATTTGTTAACAGTATCCGATAATGATTTGACGACACTAATTCGTTAACGGAGACATTAATTTGTTAATAACGACATTAATCTGTTAACGGCGACAAATAATTAGTTATTCGACAAGAGCCAGCAGCGGGATTTGAACTCGCGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCGTTTTGGGAAGTAAGCTTTAAGCACTCACTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 5848-1846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000049.1 Anabaena lutea FACHB-196 contig49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5847 37 100.0 35 ..................................... CGGTGCTAGATCCATTCATCAACACTTGGGTCAGA 5775 37 100.0 40 ..................................... TCTGATTTTCCAGCACGCCAATTCATTTCCCCCATCTCGT 5698 37 100.0 41 ..................................... AGCGTAGCTATCGCTCAATCACTGCTTTGTAGTATTTTAAA 5620 37 100.0 37 ..................................... GGCTAAGTGGGTGTATATCCTAAATGCGTAAATCGTT 5546 37 100.0 37 ..................................... AACTGGTAAACTCAATTCAGCAAAAGCCAAATTTTTA 5472 37 100.0 41 ..................................... TCGCTAACAGTTAGGGGGGACAGTAAAAATATTCTCCAAGA 5394 37 100.0 37 ..................................... TAAATCCCGCAACCTCTGTATTAAAGACAGAAAAATT 5320 37 100.0 37 ..................................... TATGAGGGCGTTCTTTATGCAGCAGGTCACAAAACAA 5246 37 100.0 32 ..................................... GTGGCAGTAATTGCGCTATATACACAAACGGA 5177 37 100.0 35 ..................................... TTTGATGGCATCAATAATAAATCCGGTTGGGTTCT 5105 37 100.0 37 ..................................... TTTTGCATCTTTTATCTCAAAAGAAGAAGCAAGGAAT 5031 37 100.0 33 ..................................... TCAATCGCACAAATCATCTTTGGTTGCTGGCAT 4961 37 100.0 40 ..................................... ATTATAGCTTTCATGAGTTGAGAAACTTATGGGTAAAATA 4884 37 100.0 34 ..................................... TCAGAACAAAAAGGAATTACAAAATCACACGGTT 4813 37 100.0 35 ..................................... ATTGAATTCCTCCTAAACAATAAAACAATTCTTGT 4741 37 100.0 39 ..................................... GTTTATTCTTTCATCAGGCGTTCCAGCGTCTAAATAAGT 4665 37 100.0 34 ..................................... CGTATGACTGATGTGGAGGTGTAACTAGTGGCCT 4594 37 100.0 34 ..................................... ACTCCAGTTTTTGGTACTGAAGAGGTAATCACTA 4523 37 100.0 38 ..................................... TCCTCTCGATGAAATAATGGAAGAAACTATCCAAAAAA 4448 37 100.0 33 ..................................... TGCCCCCAAATTACCAGCTGGGGACAAGATGAA 4378 37 100.0 33 ..................................... AGGGTAGAAAGACTCTATTTTGAGATAGTCTTT 4308 37 100.0 41 ..................................... AATTGGCTTCTAGTTTCGTAGTGCTTATACTTGCCTATCAG 4230 37 100.0 41 ..................................... TACACAGTCAACCATCATAAAAACCAAAGGTGAATGACACC 4152 37 100.0 37 ..................................... GACCTTAAACCCTACATCGGTAGTTATGGCGTGGGAG 4078 37 100.0 40 ..................................... TTGACAATCAATAACGGTGAGGCAACCGTTAGCGTTCCAA 4001 37 100.0 35 ..................................... TCAGTATCAAAGGGTAAATCTATTGGCGTGGATAT 3929 37 100.0 36 ..................................... TAGTATCTCAAGAAATGAGGCGAGAGACGTTAACTA 3856 37 100.0 33 ..................................... AAATAAAATTTGCATTTTTCTAAAAACTCATAG 3786 37 100.0 41 ..................................... AAACGGAACATCTATTCCTGAATAATTATAATCTTGATTAA 3708 37 100.0 35 ..................................... CTGCCCAATTAGCGGCGATCGCCACCGGGATTTTA 3636 37 100.0 32 ..................................... TTTTAAAGAAGTACCAATACTGCCAACGGCAG 3567 37 100.0 35 ..................................... ACGCTGTAAACAGCGTAACAGGTAAAGTAAAATGA 3495 37 100.0 36 ..................................... CTATCAACAAAACTAATAATCCCAAACGCAAGCTTG 3422 37 100.0 36 ..................................... ATGACAATTACAGCAGTTTTGGGTGAAATTGGCTCT 3349 37 100.0 38 ..................................... CCCTAACTGATAGTGGAAAACAATTAACTATCAGCAAA 3274 37 100.0 32 ..................................... TCTTTGCTTTCTACTTGGATTCAGCTTTACAA 3205 37 100.0 37 ..................................... TATTTTTTGGGGTTGAATATCACTCTTAAGTTGATTA 3131 37 100.0 34 ..................................... TGAGTTCGGGCAGAGATGCCAAGTAGCGCTTCGC 3060 37 100.0 39 ..................................... CCTAATAAAGGAGTAATCATTGAATTAAGAAAAGGATAC 2984 37 100.0 35 ..................................... TACAAAAATGTAATAGACTGGATAAAGAATAATCC 2912 37 100.0 34 ..................................... CATTTGAGCGCTGGATTCCAACCGAGTCTAGTGA 2841 37 100.0 41 ..................................... TTTTTGGTGGTACAATTTGATCCATCGTAGATTGCCATAAA 2763 37 100.0 33 ..................................... TATCCCAATTAATGAAGCCAGCAAATCTATCTC 2693 37 100.0 41 ..................................... TCTAAATCTATTTATAATAACCCGGTAGGAGAACAATTTTA 2615 37 100.0 33 ..................................... AACAAAAATTATTTTCTCTGACTGGAACAGCAA 2545 37 100.0 39 ..................................... TTCTAATTCTCTGTAGCTCCTTTTGCTCAGGTGATAAAT 2469 37 100.0 38 ..................................... AGAAGTTTTGAAAATAAATTAAGTAATGAAAAATGGAA 2394 37 100.0 36 ..................................... TAGCTCAACACTGCCTATAAGCCAATTAAGAAGATT 2321 37 100.0 32 ..................................... TGCATTTTCAAGCATGGATTCAAAATTAGAAA 2252 37 100.0 35 ..................................... TTCTAATTGCGATCGCTTTATCAGCATTTTCAATA 2180 37 100.0 40 ..................................... AACTCTCGTAGTCAACTTCCTATCTTAGAAACAGTTGAAT 2103 37 100.0 36 ..................................... TTGACCTTACATTTAATACTTGGGAATGGCAGCTTA 2030 37 100.0 35 ..................................... CAAAAATAATTAGGCGTTAGCCTTGTAACATTAAA 1958 37 100.0 39 ..................................... GCTCCTAAATGGCATGGTGATGACATTACTCTTCTTTAT 1882 37 78.4 0 G.........C.CA..................TTCT. | ========== ====== ====== ====== ===================================== ========================================= ================== 55 37 99.6 36 ATTGCAATTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATAATGTGGCGCGAAATGAAAGTGATGTTAATTTCCGTAACCAGTTATTTGTGGCTTTAACGAGGGCGCGAGGTTGGGCGAATCTCAGTGGTGTTGGTAGTTATCCTATGTATGATGAAATGCGAAAGGTAATTGCTAGTGGGGAAAGTTTTACTTTTACTTACAAGCGTCCGCCTAAGCGGGATATTGGGGATGGTGATTAGGTTCAAATTTGGTAAAGTAAAAAAATTAGGTGGTAAAAAACCACGAAATAAAAGGATTTTCTTCCCCCTAATGCGCGAGGGGGTGGGTGTAAAAAATCCGGTTTCTCAAAAAATGGCTGAAATCAAATCTAGATAAGGCTTTGATTGATTTTTTCTGTCTACACCCTCGCGCACCTTACACAGTAAGGTTTTCAGCGTTTTTCACTCTTGACACTTTTGCTGGAATGGACTATTATTATCTCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCAGACTGCCGCT # Right flank : GTTCCCATACTCTGTATGGGAATGAATTTTAGAAGGCTCTGCCTTCTTTGTAAAGTGGAGTCAGAGACTCCTGATAGCATTCCCAGTCTGAGACTGGGAACGAGATAACCTACATTTTGCTATAAACAAAAACTGGAACTCTTTTATAAGCAGGTGTACCACTTTGCGGATCAATTTCCGCTTTAAATAAAACATTAGTTTCAGGATAAAACATAAAAGCTACACCTTCACGAATTCCCCCACAAATAATTTCAATATTGTTTAATTCTCCCGCATTCCCTTTAACTGTAATTCGTTGATGTTCCTGAAATCCTGCTTTTTTGACATCCAAACTATTCATTAAAATACAATAACGATGGGGCATATTTCGATATTTATCTTCACTGCGATAAACTACAGTATTATGTTGTCCATAACTGCGTCCTGTTCCCAATATGACTATAATTCCTGACTGATTTTCTGAAACTCCAAAATCAGATTTATTCGGTAAAGATAATTGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 111838-113204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000004.1 Anabaena lutea FACHB-196 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 111838 37 100.0 35 ..................................... TTTTAATTATCATTTCACCAATATTTAAACCTTTT 111910 37 100.0 37 ..................................... TACCAATTAAGTCATCACTAAATTTCAGCGCTCGGTT 111984 37 100.0 40 ..................................... GCTAAAAGGTGAAGTTTTACTTTCTCCAGCTACGGTTCCG 112061 37 100.0 33 ..................................... TTTTGGGCGACATACCAGTCTGAGCTAAATTAG 112131 37 100.0 34 ..................................... ATTCTTTTAAAATAATTGGTGGATTATTTGCCAA 112202 37 100.0 35 ..................................... AATGAATTGTCAGATTCGCAGTTAAAGTTTTGCCA 112274 37 100.0 40 ..................................... CATTTTTTCAAACCTGGTACACGGTACTCAGGTGGCATTA 112351 37 100.0 35 ..................................... GGGAATAATATTCATAACTTGGGTCACGGTATTGC 112423 37 100.0 35 ..................................... CATCAGACTCGGATTTAAAATCTACATTTTCGCAA 112495 37 100.0 40 ..................................... TCAGTCATTCCTGCCACGTTTTGGGTTTAGTGTTGGGCAA 112572 37 100.0 34 ..................................... GCCGAATAACTAGCGTTTTCTGATGAGCCGCCAA 112643 37 100.0 39 ..................................... GGGTTCTCCACAATGGTTTGCTTGGCTTCTACCGTGTAG 112719 37 100.0 34 ..................................... CTTTTGCTACCTCATTTCCAAGATCGTTAGATAC 112790 37 100.0 45 ..................................... GAGAAGATTATCGAGGTCGTCCCCTCGGCTGGAATGCTTGGGTAA 112872 37 100.0 44 ..................................... CATAGTACGAATTGCACCATTAATTCCAGTTGCCATCTGGGATA 112953 37 100.0 35 ..................................... TTTTCGGGATTCCAGATAGCAAAATAATTAGATTG 113025 37 100.0 34 ..................................... AAAAATTGAATTTCTAGAATGGACATAAAATTAT 113096 37 100.0 35 ..................................... TCTGAATAACTTTCTGAACCTTACTCAAACTATTT 113168 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 100.0 37 ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Left flank : CCAGAAAAAGTACTTGGTCAAAGGACTGGTTCCTTTGCCAACAACTTGATCGACTGCTAGAGCGACGTTCTCATCTAACCAGAGAATTTTTAAAATGAACTTGGTCAATTACACCTCCCGGAAAAATCCGGCTATGACATTACTAAAGTTAGCGATGCTTGCGGCGGGCTACGCCGACGCTTATTTTAACGCAAACTCTGACCAATTGACCAATGATAGTTGGTGATGGATGATGGTTTATGGGTGTTTTCTGCCTATAATTTTTTTCCCGCATTGCGCGAGGGGGTGGGTGTTAAAAAACCTGTGACTCCAAAAAAGCCTGAAATCATTTTGTAGCAAGACTTTCAAGCTTTTTTGAGTTTGAATAGCCCGCGCACCTTATCCAGACTGGGTTTCAGCCATTTTCAATCTTGACACGATCCTGGAAATCGACTATGATTAGACCACTCGCGCAATCGAACCTTGAAAACCAAATACAGTCAGCCTTTCCGGCTCCTGCT # Right flank : CACCAGTCCAAATTCTGGAATATGATGAGGATTACAGTTATCATTTGCTTCCATGACCAAACAAACAAATGCAATAGTCGTTTTTGATATAGATGGAGTAATCCGTGATGTTGGTGGCTCATATCGCCGCGCTTTAGCAGATACAGTAGAGCATTTTACCCACCAGGCTTATCGTCCCACACCTGTAGACATCGACAATCTGAAATCAGAAGGGATTTGGAACAACGATTGGGAAGCTTCCCAAGAATTCATTTACCGCCATTTTGTCAGTCAAGGAACAACCCGCGCACAACTGCAATTAGATTATGAAAGTATAGTTAGCTATTTTCAAACTCGTTACCGGGGTACAGATTCAGAAAATTGGAATGGATATATTTGTAACGAACCTTTATTAGCACAGCCTGGTTATTTTCAAGAACTAACCCAATGTGGTATTTGTTGGGGATTTTTCAGTGGTGCTACTCGCGGTTCTGCTACCTATGTCTTAGAAAAACGCTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 92513-92250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000008.1 Anabaena lutea FACHB-196 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 92512 38 97.4 35 .....................................A ATCCTTCAGCCACAAGCAGGTGATACATCAAGCTA 92439 38 100.0 37 ...................................... GCTCTGTTTTTGCGTTACCGAGTTGTAACCCTAGATT 92364 38 100.0 39 ...................................... ACTTGATTGAGGCTAACGCCTTCATCGTTCATCAGCGCG 92287 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 4 38 99.3 37 TCTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAACT # Left flank : TTACTCCTGACTCCTGACTTTTGACTCCTGAATTCTGCTGTAATATGAAGCTGCATAGAATACAATATCAAGAATAATCGACCGCAGATGAACGCAGATAAACACAGATAAGGATGGTTCAATCTATGGATTTAAGGATTCTGTGCAGCCTCACATAGAATTGGTATAAGCAGAAGCAATTTTAGATTTTTCTAGTCAAGCTGATGTAATTCGCTGGTTAGAAAATTTCGATAAATGTGGCTCGTAATCTGTAAAAAACTTGACATTTATGGTTATTTGCTGTACATATAGAAGATGTGTCGAGGTCATCGACACCACTCGTCAGAACCTTGAAAACCGCATAACTTCGTTGATTGGTGTCGATTGCTTTTGTAGTAAGGGTTTCGACTGTTGAAATAGGCAGTTTTTTTATCAATAAGCACTGCTTTTTTGTCAATAAAAAAAGTGGTGTCGATTTGGGTATCTGAAACTCTTGCTCAGTAAGGTTTCTAGAAGTTAAC # Right flank : CGACCCGTTGAACTATAGGTTTGTACTCATACCCCTTTCCAAACCAACTTCCCCTAAACTAAGGCTTTGAGTAATGCTTGCAGTTTCAGTTGTACTTCAGCAAATTCTTTCTCAGGATTAGAACCTGCAACGATACCAGCACCTGCATAAAGTCTAGCGCGATTGCCATCAATTAATGCCGAACGAATCCCTACAATAAACTCACAATTACCCGAACCATCTACCCAACCCAAAGGTGCGGCATATAAACCTCTTTCAAAACTTTCATAATTACGAATTTCTGTACAAGCAATATCTCTAGCTGCACCTGCAACCGCTGGTGTAGGATGTAATTGTCCGACAATTTTTAAGGGGTGGACATTAGCAGGAACTACAGCACTAATGGGTGTCCATAAATGCTGAATATTCGATAATTGTCGCAGACGTGGTGATAGAATTTGTGGAAATAAACCTAGTTGTGATAGACGTTGTGTAATAAAGTCTAGTACTAGTTTATGTTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCCAAACCAACTTCCCCGCAAGGGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 86284-85362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJST010000009.1 Anabaena lutea FACHB-196 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 86283 37 100.0 42 ..................................... AAAAATTCATTCAAAAACTCTTCACAGCTAGGTAATTATAAA 86204 37 100.0 30 ..................................... TGTGACAAAACCATTCTACATCGGGGGCTT 86137 37 100.0 35 ..................................... AATCAATTTTGATAAAAGGATGCTACCAATAATAG 86065 37 100.0 33 ..................................... TATCTACGTATACGGTTATACTCTAAAATACAA 85995 37 100.0 43 ..................................... CATCGAGAGAACCATTCCAATCAATACAAGAATATTCGTATTG 85915 37 100.0 35 ..................................... CATATGCAGCCCCTTTGAAATAAAAGTAAAGCTTA 85843 37 100.0 34 ..................................... TTTGGCCTAAGCCCATATCCCCCACTTTGCGATA 85772 37 100.0 36 ..................................... TGGAGATACTTTTGGCGTATTTCAGATGGAAGGAAA 85699 37 100.0 42 ..................................... TTGAGGTTGCTGGTTGGATGGTTGCATTGGTGGTTGGTTGAA 85620 37 100.0 35 ..................................... TCTTACTTACCCAAGATACTTCCCTATTCAATATT 85548 37 100.0 35 ..................................... AGCAGCTATATTAGGGGATGTGTGAAAAGAAGCAA 85476 37 100.0 41 ..................................... ATTAGCGATCGCCTACCTTGTCAGAAGTAAAGCGATCGCTT 85398 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 100.0 37 ATTGCAATTCTCATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCCACATCCCACACTAATCCTGTATATATTGATGAGGGTGTGGTACATTATGGTGTTCCTAATATGCCGGGGGCAGTACCTTGGACAGCAACCCAAGCGCTGAACAACAGTACTTTACCTTATGTTGTGCAGTTAGCTAATTTGGGAATTAAGGCTTTGGATGTGAATCCTGCTTTGGCTAAGGGTTTGAATGTGCAGAATGGTCGTTTGGTACATCCGGCTGTACAAGAGGTTTTTCCTGATTTGGTCAGTTAATCATCAGCTTTTTTGCGCGGATGGGTGGGTGTAAAATTTAGATGGTTCAAAAAAATAGCTGTATCTCTTGATAGGCTTGGCTTTGCGGCTATTAATGTTGATGAACCATCCGCGCACCTTACACAGACTGGGTTTCAGCGTTTTTTGTCCTTGACACAATTTCTGGAATGGACTATGATGATCATGCTCGCGCAATCGAACCTTGAAAACCAAATACACAAAGGCTTTCAGCCTCCCGCT # Right flank : CATAGTTTGTATCTATTACCTTTGCCTCTTTGCTTACGGTTCCGTAAGGGATACGCAATTCATTTTATCTAATTTCCTAGCATTGACCCTATTGACATCTCTTCGTGATAAAATGATAAAATTTATTTGCTAAGTGCAGAAATTAAGAGATTATGGAAATAATTGCAGGTATTTCATAGAGGAAAATCTCAACCATGAATAAATTATTAGATGAAGCCTTATCTCACCAAGTTGCACAAAGCATCAAAAGTAAAGCTAAAAAGCCTTTTGAAAATGCTTATAAAGCAGCTTTAGCAACTGAGGGTTCAAAGTATGTTCAAGGTTTTTTGGTATTTAGTGGTCAGCCATATAAACCTGTTGAACATGGTTGGATTGAGTTAGGTGATGTGATTATTGATCCCACCCTTCCTTATTTGCAAAAAAACCATAAAGACCTTTGGTATTTTCCCGCGCAAAGTCTGACTGTCAAAAAGCTAAAAGCAATAATTGACGAATCAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCTCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //