Array 1 430283-431241 **** Predicted by CRISPRDetect 2.4 *** >NC_017768.1 Streptococcus mutans LJ23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 430283 32 100.0 34 ................................ TCAAACAACATGCTTATCCGGTGATAACACTGAC 430349 32 100.0 34 ................................ TGTTACGTGCTCCAAAAAATCAATTGGTACAGTC 430415 32 100.0 34 ................................ TTTTAATGTCTCATAAACTTGGTTGCCATCTATA 430481 32 100.0 35 ................................ AAATTTGGGGCAGTGATTATGACGGGACTTACTTT 430548 32 100.0 33 ................................ AATTTGGAAGTGTCAAAAAAGGCCTCCCGGAAC 430613 32 100.0 34 ................................ CAATGGTGTAGCTGAAATCTCACAACAAAAAGCT 430679 32 100.0 34 ................................ TCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGAT 430745 32 100.0 34 ................................ ATCTACTTTGATAAAGACACAAAAACACTTGACT 430811 32 100.0 35 ................................ CAAAAAGTCGATTGGTACAGTCCAACTTTGATTAC 430878 32 96.9 35 .....C.......................... AATAGATGCGTCCACTATAATTACACCTACCATCT 430945 32 96.9 34 .....C.......................... TAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGC 431011 32 96.9 34 .....C.......................... CTAAGCGCTCGGAGGCCGTGTTATTAGATAACTT 431077 32 96.9 36 .....C.......................... TTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAG 431145 32 96.9 33 .....C.......................... ACAACGAAAAAACACTCAGTGATTTTGGATTTA 431210 32 96.9 0 .....C.......................... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 98.8 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGCAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACAAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGGTACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTTGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTGAAATCAATCGCATAGTATATGAAATGAGTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTGGTATAATAAAAGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAATCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGTATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACCGTTTCAGAATATTTTTGGTTGTTTCATTCTCATTGGTTAGTTTCGTCAAACAAATATTTCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 758428-759057 **** Predicted by CRISPRDetect 2.4 *** >NC_017768.1 Streptococcus mutans LJ23, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 758428 36 100.0 30 .................................... GAGAAGCATGAATGGTTAGTGGATAAGCTT 758494 36 100.0 30 .................................... TGAAGTGCAAGCTTACGTGACTGACTCGCG 758560 36 100.0 30 .................................... TAATGTAAAAGGCTTATATGAATAATAAAT 758626 36 100.0 30 .................................... AGACGAGATGTACAATCGTGTTTCTCTAAG 758692 36 100.0 30 .................................... TAATTCCAAGTCAGCTTTCAACGCTTTTAG 758758 36 100.0 30 .................................... TTGTCCCATCAACAAAAGTTCCTTTTTCAG 758824 36 100.0 30 .................................... GAGAAGTTAAAAAAATATGACTGGCAAGCT 758890 36 100.0 30 .................................... TACCGCTTATGCAGATGATGCCGAAGGAAA 758956 36 100.0 30 .................................... AATAGAATCAAATTCTCCTAAGTCAGTTAA 759022 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [759038] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CGCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTGTTGACGTCCTAAGGTTTGATACAGATCTTTAGCTTTTATCACATTGTCCCAATGAATAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //