Array 1 31825-31428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTN01000035.1 Streptomyces kurssanovii strain JCM 4388 sequence035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31824 29 96.6 32 ......G...................... GTGGCCGGCGTCGGCTGGGGAGCATCCGCGCT 31763 29 100.0 32 ............................. ACCCGCCTCGACAAGGTCGTCCCGCTCGACGT 31702 29 100.0 32 ............................. TTCATCAACGCCCACAGCGAGACCGACGCCGG 31641 29 96.6 32 ........T.................... TCAGTGAGGACTCACGCCCGGAAAGGAACAGG 31580 29 100.0 32 ............................. GAGGGGACGCTCGGGCGTCTGGATGGTGAGCG 31519 29 93.1 33 ......T.........T............ CCGGCCGCACGACGGACCGGGCCGAGGCCGATC 31457 29 96.6 0 ...........G................. | T [31430] ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCTCGTACCACTGCTTGTACGGATTGTCGCACCGCGTAATGGTGAAGTCACCGCCCCCAGTCTCCGGCAGTTCGGCCAGTGTGTCCTCCAAGGCGATCACCTCCGCGGCGGGAGCACCCACAGGGCTGAGGTCTGTGCCGTCGTCCGCGATCGCCGGCGTGGCCAGGGCAGTGATGACAGCCAGAGTGGCGGCTGGGATGAGAGCACGTCTCACCGATGCGCTACGCATGTGAATTCCCCCTAGTTCAACGCCTGTTAAGGCGGGTCGGAAGTGACCGTACGGGGCTCGTTCGTCTCCGACCAGGAACTTGAGCAAGATGTGAGGTAGATCGTCTGTTCATCGTTGAAGCAATTTCGCTGCCAAGCCTGCGCGAGTGCCGTTCCACCGCTGCAAAGTGCCGCTGACTCGGCAATTCGGGCGGGGGAGGCGAAGTGGAACAGCGCCGCGACGACGCGGCCTTGCGGCGGGTGGCCAAATGGCGCGGGTCCTGGTCGCCGTT # Right flank : GTTGAATGACGGTGGGGCAATGTGTGGCGGCCGCTGCTGGCGTGGGACGGCGCGGCACCAGTTCGAAGGCGCAGGCACTCAGGGACGGAGGTCGTCGTTGCGGCGGCCGTCCCTGCCGGAGCCGAGGAGCACTGGCGGGCGGGCACCTCCAACGTAAAGCGGGACCTCGAGAAAACTGGGTTCAGGAACCGGCAGGCAGAACGGCTCGCCTGGCCCGGAGCTGGACGAAGACGTGGGTTTGCTGGTGTGGCTGCCGCAGGCTCGCGTCTGCCGCCCTACCGGTTTTAGAGCCTCCTGATCGGTCTGGAGTTCGTTGGTCGGTGGGGTGAAAGGACTCGGTGGGGTTCAGCGGCGCCGAGGACGGTGCCGACAGGAGCTGCTGCTGGGGAGCACGACCAGCTCCTGTCGGCCCACTCGCACGGTGGGAGGGGGGGCACTCCCCCGGCGACCGCGGCCGGCCGCGGGTGACGCCAGGAACCGGCCGGCCGCGGGCCACGGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36431-36158 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTN01000035.1 Streptomyces kurssanovii strain JCM 4388 sequence035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36430 29 96.6 32 .........................C... CGGGGCAGCACCGCTTTCGTCAGCGGCTCGAC 36369 29 93.1 32 ...........G.............C... GCACCGTCGCCCGCCTCGCCGAAGGCATCCAC 36308 29 100.0 32 ............................. CGCATTGCCCGGCCGGTTCAGGGCGGCCCCGT 36247 29 96.6 32 .............T............... AGGCCGTTTACACGTGGGTCCGTCAGCGCATC 36186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGTGCCGTGGCGGTCGACGATCAGATGGTGTTTGGAGCCGGGACGGGCACGGTCGACGGGCGAAGGGCCGACGTGATCCCCCCTTTCAGGGCCCGGACATGCGACCGTCCACGGTGCAGTCGTCCAGGCCCAGAAGGTCAGCGCGGCGCAGTTCTGTCAGCAGGGCGGCATGCAGACGCGACCAGACGCCAGCCTCGGTCCAGTCCCGCAGCCGGCGCCAGGCCGTCGCCCCGGAGCAGCCCACAGTCTCGGCCGGAACATCGCGCCAGGCGACGCCGGTCCGCAGCACATACATGATGCCCGCAAGGGCCGCCCGGTCCGGAACACGCAATCGACCTGGGTGGTGGTGGCGGCGTTCGGGAGCGGGCGGCAGCAGCGGAGCGACCCGCTCCCACAGGTCATCCGGAACAAGATCAGCGCGCACCCGGACACCCTGCCTACCAAGATCGCCAAGCACAAGGGCCAGGGCTCAACTCATTTTGAAACGATCAGTAAGTGG # Right flank : CAGGTGTCGGCTCCGAGGTGTTTTAAGGCGCACAGGCGCCCGGCCCTCTGGCCTTGGGGAGGCTGTTCATTCCGCCCGCAATGGCAAGCCCACAAGGCTGTCGTCCCATCAGGTATGGCTTGGTAACGCGCGGGAGCTTCTATGGATCTTGTTAGTTAGTAAGGTGTCGGCCATGACTTCGCCACAACCCGGCGACCGGGACAAGGTCGTCTCCAAGCTGCCTGCCTCGCTCCAACAAGAGCTAAAGATTCGTACCGCCCAGCATGGCATCGACATTCAGCACGCCGTCGAAGCCGGCATCAACGCCTGGCGGGGTTTGGGATCCAACCTGTCTGCCATCGACACGGCTGGGGCCAAGTCGTTCTCCACGTGGCTTCCCCCCACTCAGTGGGAGGAGTTTCGCGCTGACTGCTCCGTCCGTGGCGTATCCCTGGTGCAGGGCCTCGCTCAGTCCGTACGCCTGTGGCTTGACAGCAATCCTGCCCCTGGTGTGCAACGGC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11784-10536 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTN01000039.1 Streptomyces kurssanovii strain JCM 4388 sequence039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11783 29 100.0 32 ............................. CAGCCGCCGTCATAGGCCTGCCGCCTGGTGCG 11722 29 100.0 32 ............................. GGCTTCTTCTTCGCTGAAGATCACGCCGGATC 11661 29 100.0 32 ............................. GTGGGGCGCACCACGTCGAAGCCCTCGACAGT 11600 29 100.0 32 ............................. GAGTTGTGCCACCGGGTCCGCCGATCAGAGCG 11539 29 100.0 32 ............................. ATCACGCCGCCGATCACCGGACGGAACGGGGC 11478 29 100.0 32 ............................. CCACGGTGCCGCAGTGCCCCGAGGCCCTGTTC 11417 28 96.6 32 .................-........... TGCCTTCGCGGCCCGCTCCTCGGCGGACGTGA 11357 29 100.0 32 ............................. GCGTCCGCGAACGCGGCGTACTCCGTACCCGG 11296 29 100.0 32 ............................. GAAATTCGCCTCATCGGCCAGGGCGCCGGCAA 11235 29 100.0 32 ............................. CCGTCCATCGATCGCGAGGAGGCGCCCGGCAT 11174 29 100.0 32 ............................. GCGGAACGTGGACAGCCGGTCCGAAACCCAAG 11113 29 96.6 31 ............................G TCCTCGAGGACCTCCGCGGGCTCCGGTGACT 11053 29 100.0 32 ............................. CGGTACCTGCGGCTGCACCTGAACGTCCGCAC 10992 29 100.0 32 ............................. AGGCATGGAGCCGCGCCGATTTCTGGTGCGGA 10931 29 100.0 32 ............................. CCGCCGGGGATGTGATCGGGGTCCAGCTCACC 10870 29 100.0 32 ............................. TCCGTCGACTTCGTGACGCCCTTGAAGACGTG 10809 29 100.0 32 ............................. ACAGTGGTGTCGGTCGTCTCCTCCTCGTGGCT 10748 29 100.0 32 ............................. GTCCAGATCGACGTGTCCGGGGCGATCGACCC 10687 29 96.6 32 .....................G....... CACAGACCGCCGAACAGGGCGATGCCGCCGAC 10626 29 100.0 32 ............................. GTCGAGTACGACAGCCGTTCGCCTTGGCCGTT 10565 29 100.0 0 ............................. | G [10538] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCCTCAGGGCGCAACTACGGTGGACCGGACGTGGACTTGGAGACGACCTGGTGACCGTGATCGTCCTCACCAACTGCCCGGAAGGACTCCGCGGATTCCTCACCCGCTGGCTCCTCGAGATCTCCGCCGGCGTCTTCATCGGCAACCCGTCGGCGCGCATCCGCGACGTGCTGTGGGACGAAGTCCGGCAATACGCCGGCGAAGGCCGAGCCTTGCTCGCCCACACAACGAACAACGAACAGGGCTTCACCTTCCGCACCCACGATCACAACTGGCACCCGATCGACCATGAGGGCGTAACCCTGATCCGCCGCCCGACACCGAAACCTGACGGGCCCAGTCCTGCGACTGCGCCGCCCCGCGGCTGGAGTAAGGCATCGAAGAGGCGCCGCTTCGGGCGTGGATAGTGTGCACTTTTGAGCTATTTCGGAGAAATGCCAGAATCGGCGAAAGTGCTCCAAAACCGCGGTCGTCACCGGTAAAGCTGCAGGTCGCGCAGT # Right flank : TGCTCACTGCCCCTTGACGAGTGGGGAGGCACTCCCGCCGATTGCCCTTGGACCCGGATAAGCTCCCCATATGCGGACTCCACTGGGGCGCGTAAATCCGGTGAACGGGGCGGATCATGTCAGACAGTCAGAAGACGGTTGAACCGGTCGTCATCCCGGCGGTGCCGGCCCGGCCGGAGGCGTACGACCCCGCGACCCGGGCGGCGCTGGAGCACATCGACCGCCAGGCCGTGCGCGCCGTCGCCGACGGCCGCCCCGAGGCCACCCGCGACGCCTACACCCAGGACTGGGCGAGCTGGAGCAAGTTCTGCGCCGCCTGCGAGGTGCCGGTCCTCGCCGTCACCCCCGGCACCCTGGTGATGTTCGTCGAGTGGCTGTGGACCCAGCCCGGAGGACGCAAGGGGACCTGCACCGCGCCGTCCACCATCGACCGGCGGATCTCCGGCACCGTGGTGACCGCCCGCGCCGAGCACGGCGTGCGGCTGGAGGACGGCGTCGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21936-23123 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTN01000039.1 Streptomyces kurssanovii strain JCM 4388 sequence039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21936 29 89.7 32 ........T......T........C.... AAGGCGCGGACGGCGCCCTGCCCGCCGGAGCT 21997 29 93.1 32 ........T...............C.... CGCCTCCGCAAACCCAGCTGATCGTGAAGGAG 22058 29 96.6 32 ........................C.... GTGACCACCGGCGGGACGACTTCACTGCAGTC 22119 29 96.6 32 ........................C.... GTGACCACCGGCGGGACGACTTCACTGCAGTC 22180 29 96.6 32 ........................C.... GTGACCACCGGCGGGACGACTTCACTGCAGTC 22241 29 96.6 32 ........................C.... GTGACCACCGGCGGGACGACTTCACTGCAGTC 22302 29 96.6 32 ........................C.... AACAAGTACACCGGCGAAACGTGTCATTGCCG 22363 29 96.6 32 .....T....................... GTCTCCGCGAAAACGGTCAGTCGCGCACTGGC 22424 29 100.0 32 ............................. ACGAAGCTCGTCGACACCGTCGCCAAGCTCGC 22485 29 100.0 32 ............................. ATCGGCCTGTCGAACCTGTCCCTTGCGCCGGG 22546 29 100.0 32 ............................. CTCCTGCACACCTCCGCGGCCGCGCAGATCCT 22607 29 100.0 32 ............................. AACCAGGCCGGCGAGCTCGCCGAGGTCCGCGA 22668 29 96.6 32 .........................C... GGCCAGCTCATGGGCTACATCAACGGCCGCCT 22729 29 96.6 32 .........................C... ATGGTCAGGTCAGCGTTTGCCGCGAACGCGGC 22790 29 100.0 32 ............................. AAGGAACCGGATTGGGAGTAGATGCTCGCGAC 22851 29 100.0 32 ............................. GCCGACCTGCACATGTCGACGCGGGCCCAGAA 22912 29 100.0 32 ............................. ACCACCGTCCCGAAATCCCGGACGGACAAGAA 22973 29 100.0 32 ............................. GTCGGCTTCACGACCTCGGGGCCCTCCACGGT 23034 29 100.0 32 ............................. AGGCTGGGCCAGTCCGTCTCACCCTGCGCGCG 23095 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GATGTCGTGCACACCGGCGAGCCACACGGCGAGCCGCCGGGCGTCCGCTTCCCCCTCAGGCAGGGCTTCGGCAAGCAACTTCCGTACGCCCGCGGGCAGCCATTCGTCCCACAGCCGCCCGGCGACCGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAGCCACCGTTCGGAGTCCCGGTCGTGCTTGGCCCACACGGTCAGCACCGGCCCGTCGAGCCTGGCTCGCAGCCCCGTGCGGGCGGTCCCCTCGTCTCTCATGCCCGATGAATACAGCCCAAAGACGAGGAGTGAAGGCGGTATGAGGAAACTACGGAGAATCCGTTTCCGATTCAGCCGCAACGGACACAACCGCCTGATGCAGCAGTAAAGTTGATCTTTTGGGTAGGGCCGCATCAACTACCAGGGCGAGAGGAAAACAAAATATGTCCAACTTGCCGGTTTCCCTGGAAGTGTGCGAAAATCCGCCCTCGCCGCAATAAACGCCCAGGTCACGATGT # Right flank : TGTGCTACTGGCAGCACTGTGACACTACTGATCTTTTCGTAAGTTCGGTGGGTGTGGTGGGCGGATGGTCAGGCCGGTGTGGGCGAGGAATGACCATGGCAGTCGGGGGTTGGCGTTGA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //