Array 1 2843351-2843738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028849.1 Pseudomonas aeruginosa strain IMP68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2843351 28 100.0 32 ............................ GCTGGCCGAGACCGACAAGTCGAAGCGCACGG 2843411 28 100.0 32 ............................ TGTTCGTAGCCGATATCGCTGCACGCGATGCA 2843471 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 2843531 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 2843591 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 2843651 28 100.0 32 ............................ TCCTAGTTCTTCGCCAAGCCGGAAACCGAGGC 2843711 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : AGTAGGAACGCCATCCACTCGAGGTCATGGCGCGTTCACTGTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAGAATCCTCGCCGTGAGAGAGGTGTCTGATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCTGCCGCCCTGGTGCTGGACCAAGGCTACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGGACTCGGCCTTGCGCCGTTGGGTGAAGCAGCTCGAGGCGGAGCGCCAGGGTATGACCCCGAAGAGCAAGGCGTTGACGCCTGAGCAGCAAAAGATCCAGGAGCTGGAAGCCCGGATCAACCGGCTGGAGCGGGAGAAAGCGATATTAAAAAAGGCTACCGCTCTCTTGATGTCGGACGAACTCGATCGTACGCGCTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2845010-2845757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028849.1 Pseudomonas aeruginosa strain IMP68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2845010 28 92.9 32 C.A......................... TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 2845070 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 2845130 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 2845190 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 2845250 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 2845310 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 2845370 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 2845430 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 2845490 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 2845550 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 2845610 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCA 2845670 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2845730 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTGGATCTGCATACCCGGCGGGTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAGCTGGTGATCAAGGCCCTGGACATGGCCTACGAACAGCGCGGGAAGCCACAGCAGGTGCTGTTCCATTCAGACCAGGGCAGCCAGTACGTCAGCCGCCTGTTTCGGCAACGGCTCTGGCGCTACCGGATGCAGCAGAGCATGAGCCGCCGGGGGAATTGCTGGGATAACTCGCCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAGGCCCAACGGGACATCAGTCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2855681-2854273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028849.1 Pseudomonas aeruginosa strain IMP68 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2855680 28 100.0 32 ............................ ATCAGTCGATCCGATCCAGCGTGCCGTTGAGC 2855620 28 100.0 32 ............................ TGCCACCCTGTCCGCCGTCGCAGTATCCGTAC 2855560 28 100.0 32 ............................ ATGTCCCAGAGCTTGCCAAGCTGCTGGGCCGC 2855500 28 100.0 32 ............................ TCGTCGTTGATGCTTTTCAATATCTTTGATGC 2855440 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 2855380 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 2855320 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 2855260 28 100.0 32 ............................ ATCACGAAAACGCGGCGGCCGTACCGGTTGCC 2855200 28 100.0 32 ............................ ACATGCCGATCCTGCTTAAGCGACGGGATAAT 2855140 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 2855080 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 2855020 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 2854960 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 2854900 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 2854840 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 2854780 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 2854720 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 2854660 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 2854600 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 2854540 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 2854480 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 2854420 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 2854360 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 2854300 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //