Array 1 17266-17953 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQI01000022.1 Pasteurella multocida strain PY81579 22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17266 28 100.0 32 ............................ ACTTGCATCAGCTCACGAAACGTGCCCTGTGC 17326 28 100.0 32 ............................ GCCGGGTGCAGCCCCAAGTCTGTTCTGCAAAT 17386 28 100.0 32 ............................ ACAAAAGTGGCTTTTCTTTTATCTAAAAATTG 17446 28 100.0 32 ............................ ATCAACTGGTGCAGACAAAACCATAAATGGAA 17506 28 100.0 32 ............................ TCTGTTGTTGGCTGGTTGCCGTTATTAATAGT 17566 28 100.0 32 ............................ ATTGATTAAAGCATTTGCAATTGTTGCGGGAT 17626 28 100.0 32 ............................ ATTAATGATTTGCTTAGCCATATTTGTCTCCT 17686 28 100.0 32 ............................ ATTGAAGAGCTTGCTTCCAGATTATAAAGCAA 17746 28 100.0 32 ............................ ACTATGTATTCTCGGCTCCATGCTTGAACCTT 17806 28 100.0 32 ............................ AACTGATTTATTAGTGGTTATGTCTAAGCGTT 17866 28 100.0 32 ............................ AACGGTTCTTCAAGTAGTGGCGGTAATGCACA 17926 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTTTTAGGTGATGGGATATTTCGTTATGCTGAGTTAACTGCCGTATAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 410554-409564 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQI01000002.1 Pasteurella multocida strain PY81579 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 410553 28 100.0 33 ............................ ACCGCACTCAACAAGACGGAACCAAAGCCCGAA 410492 28 100.0 32 ............................ GATTACAGGCTGAAGCTGACAGAGTACGACAA 410432 28 100.0 32 ............................ TTTTTAGGGTCAAGTGCCGCTGTACGCATAGC 410372 28 100.0 32 ............................ CGTGTAAAACCCTTCACCGAACAGTTCTTCTG 410312 28 100.0 32 ............................ TTATTTAATTCACATTCATCCAGCCTCAGTTT 410252 28 100.0 32 ............................ ACCATTTGCTAACGTTAAAAATCGACGCATAA 410192 28 100.0 33 ............................ AATCAACGCTTTGCTTGCGACATCGCGCTCAAT 410131 28 100.0 32 ............................ TCTTCACTCTCAAAACTTATCGTCACTGAATT 410071 28 100.0 32 ............................ TATCAGTAGGGCTAAAGGTTGTAGATGATGAA 410011 28 100.0 32 ............................ ACTTAACCAAATCCAGTTACCGCAAATTTCAA 409951 28 100.0 32 ............................ AGACTGGATAATAGATTGTAATAAACAACAGT 409891 28 100.0 32 ............................ GCAACAAAAGCAGCGCAGACTGCAACCAGAAG 409831 28 100.0 32 ............................ TCCATCACATCGTCAATTTCGGTTATTTGATG 409771 28 100.0 32 ............................ AATAAAACGGATCGCTTAAAATTTCGTTGTAT 409711 28 100.0 32 ............................ TCTTAAGTCTTTGTCATCTTCGATATTAATCA 409651 28 100.0 32 ............................ AAATTGTAATTTATCTAATAAATATGATAGCT 409591 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTATAGGCAGCTTAGAAACGTTTACAATTGGGTAGATGTTTACTCGCACA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90480-88649 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQI01000003.1 Pasteurella multocida strain PY81579 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90479 28 100.0 33 ............................ GAAAGGAAGTAGAAAATATTACTTTCTACTTCC 90418 28 100.0 33 ............................ ATTAATGCGCAAGTATTACAGCAAGCTTTGGTT 90357 28 100.0 32 ............................ TATCGTAGTTTATAAGCTTGCACTGGTTTCTA 90297 28 100.0 32 ............................ ATGTTCTACCTGTTCATTTTTCCAAAAACTAT 90237 28 100.0 32 ............................ AACTGATTTATGATCGCCAAAATTACCATTTT 90177 28 100.0 32 ............................ GCTTGAATGCGTTCATCGAACGTTAAGCGGTC 90117 28 100.0 32 ............................ GGGAAAAAGCGATATTCATATCGACGATATCG 90057 28 100.0 32 ............................ CGCTACGCAAACACCCTAGAACAAGTGGTTAA 89997 28 100.0 32 ............................ AGATGCAATCCCTCTTGCTGAGCGTCGTTTCG 89937 28 100.0 32 ............................ ATCTGAAAATTTCTAAATCCGCCATCGGATAT 89877 28 100.0 32 ............................ CCACCGGAACCACAGCAAAATGATCCGTATGG 89817 28 100.0 32 ............................ CAGATGCTCCTAATATCAACCCAACAGAGAAT 89757 28 100.0 32 ............................ TTGCCCGCATTCGCTAATTATTCACGGTAAAG 89697 28 100.0 32 ............................ TAATCGTTCGATTAAACCAATTCTGAATTGAT 89637 28 100.0 33 ............................ TTTTTTCAAAAACTGCGCGGCAATGTCTGCTTG 89576 28 100.0 32 ............................ AATTGCAACGGCTGTAATGGCTGTTTTACCAT 89516 28 100.0 32 ............................ TTACTCAAACAAACAGATTTTAACACTCATCA 89456 28 100.0 32 ............................ TGTTTAATATAAAAATGATCCTTATAGATTAA 89396 28 100.0 32 ............................ AAAGATGTTGGATTAATGCAGATTAATACTAA 89336 28 100.0 32 ............................ GCTGAGAATTTATGGGCAGCGATTAAGGCAAT 89276 28 100.0 32 ............................ AATCCGAAGAATACTCGTGGCATGCAAGGCAC 89216 28 100.0 32 ............................ AGTAAGAAACCCCTTGGGCAAGAATGAAAAAC 89156 28 100.0 32 ............................ AATGAAAGAGAAAAGATTGACTTTCAGATAAG 89096 28 100.0 33 ............................ CATCAGGCATAACTTTTAATTCTGGATCATTAC 89035 28 100.0 32 ............................ GCGATATGACGCACGCTGAACTGGCATAGTCC 88975 28 100.0 32 ............................ CGAGCTTTCCAAAATTCAACTTGTGACAAATT 88915 28 100.0 32 ............................ ATGTAACACCGTCGGTAGTACCGTCTGAATTA 88855 28 100.0 32 ............................ CATGCGATTTTTGAATTTCGACTTGCATTAAT 88795 28 100.0 32 ............................ TCATCGCAAACGATAGCACACTCTACTGCATG 88735 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 88675 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTAGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : CTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50919-51875 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQI01000018.1 Pasteurella multocida strain PY81579 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 50919 37 97.3 35 .......A............................. TGGTATTTGCGTGGAAATTTGCGAGCACCACTAGT 50991 37 100.0 32 ..................................... TCGCTTTGATGAGAGTACGAACTTGTTTGTTT 51060 37 100.0 32 ..................................... TTTTCCATTTGTTAGTCCTCCATTGTTAAAAT 51129 37 100.0 36 ..................................... TCACGCAATAGATAACCGTCAGGTGAGATCGGGGTG 51202 37 100.0 33 ..................................... CCGCTTTGATAAGAGTAAGAATCTGTTTATTAG 51272 37 100.0 32 ..................................... ATGTACTCTTCGCCACTAGATACAAGGGTGAA 51341 37 100.0 34 ..................................... CGAAACGTTCTATAAGCTCCTCGACGGACTCCAT 51412 37 100.0 30 ..................................... ACCATCTTGTGTATATACTGTTGGATTCTC 51479 37 100.0 36 ..................................... TGACACTTGATATTAAACAACCAACAATTTCCTTTG 51552 37 100.0 35 ..................................... GTCACGTGTCAACGGGATGTACTCGATTTCGATCA 51624 37 100.0 35 ..................................... ACCAATATATGTACTGAACCCTTTGTATGTGATAT 51696 37 100.0 35 ..................................... ATTGCGATCAGGGTGATATTTGATAGCCATTTTTT 51768 37 97.3 34 ....................................T TAATCAATTTAGATACAATTTTTTCTTCCTTTCT 51839 37 75.7 0 ...........T.A........C...A.A...T.TTT | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 97.9 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : TATGTAGCGTGGGCATACTTGCCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCTTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCGTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //