Array 1 1193952-1192660 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023394.1 Streptococcus dysgalactiae subsp. equisimilis strain 159 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1193951 36 100.0 30 .................................... TAATTTAAACGGCTACGGTGTCAGAATTTC 1193885 36 100.0 30 .................................... AGTTGTTAAAGATTACCTACTTAAAAAAGG 1193819 36 100.0 30 .................................... AATTTCTCATGTTTATTTACCTTCTTCCTT 1193753 36 100.0 30 .................................... ATCTTATATTTCTTACACAACTGATTATTT 1193687 36 100.0 31 .................................... CAGTAAATCCAAGTGAGGTACCAGATGGATC 1193620 36 100.0 30 .................................... ATGGCAACAGTTAGCGAAGTGATTAGCTAT 1193554 36 100.0 30 .................................... GTTTAAGCATGTCAAGATTACTCGTAACCC 1193488 36 100.0 30 .................................... CAGCAAAGGGTGGAACGAGAAGCGCTCTAG 1193422 36 100.0 30 .................................... TGCTAGCAAACAAAACCCAGCTTTGGGTTG 1193356 36 100.0 30 .................................... CCGTCGGTGAGGTAGTTGATATATATAGAG 1193290 36 100.0 30 .................................... AGTAAAAATGGTTTTTGATTTTTATAATCA 1193224 36 100.0 30 .................................... ACCAGCTCGTTTTAACACTCGTGATTTTAT 1193158 36 100.0 30 .................................... CAGCAAAGGGTGGAACGAGAAGCGCTCTAG 1193092 36 100.0 30 .................................... TCAACAACCAGAAGCAAAAGATTTAGTTCT 1193026 36 100.0 30 .................................... AGCGGGTCTTACCGTTATTCCCTAAAATTT 1192960 36 100.0 30 .................................... AAACAAGACCCTCTGCAAGCTGAGTTAGTA 1192894 36 100.0 30 .................................... CATTAGCAATAAATTTAGGGATCATGGCTG 1192828 36 100.0 30 .................................... TAAGTGTAGCGAATGTTGGTTCTTTTCTAA 1192762 36 100.0 31 .................................... TTAAGATAAGACAAATGCCCTCGCTTTTGCG 1192695 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTAAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGCGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1494417-1493191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023394.1 Streptococcus dysgalactiae subsp. equisimilis strain 159 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1494416 32 100.0 35 ................................ AGAGCAAGAAAAAAAGATTGAATTTGATGACCAGC 1494349 32 100.0 35 ................................ GGAAATTAAAAGACGAGGTTGGGACATTTGAGGTT 1494282 32 100.0 35 ................................ ATTAGAATTTAAAGTCGTTGTATTTCCGCAATGTT 1494215 32 100.0 34 ................................ GGTCTTTGTAGCTAAACTTCCAGTGCTTACGCCA 1494149 32 100.0 35 ................................ AAATTGCCTAAAAGAAGCGTGGGCAGAAGAAAAAG 1494082 32 100.0 34 ................................ TCAATAAGCACAATGTCGAAATCACTGATAACTT 1494016 32 100.0 34 ................................ GAGGTGTCTTTGTCTAGTTGGGCAACCGCTAACC 1493950 32 100.0 34 ................................ AATAAACTGTTTTTTAACGTCTAATCGACGTAAA 1493884 32 100.0 34 ................................ TACCCTAACAGGTACACAACCAGTTACATTTACT 1493818 32 100.0 34 ................................ GCTATTCTTATCAAAATTTAAGTAATTTTGGTTA 1493752 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1493687 32 100.0 34 ................................ TTTTTTGGACTTATTTAAATCTCCAAAAAAAGAG 1493621 32 100.0 34 ................................ ATTTTAATATCTCCTTAATTTTTAATTGTTAAAA 1493555 32 100.0 33 ................................ GTTTTACCACTACCTCTACCTATCACACAATTA 1493490 32 100.0 34 ................................ CTTTTATCTGTAAAATCGACGAAGAGCACGAAGT 1493424 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 1493356 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 1493288 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 1493222 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.5 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //