Array 1 152641-152150 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000120.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 152640 30 100.0 36 .............................. ATTAAAAATACTTGTATGAAATTTTTAAATCCTTTT 152574 30 100.0 36 .............................. CTTCCTTAATTTCTAGCACTATAAACAAGTTCTATT 152508 30 100.0 36 .............................. GTATTAAATGCTTGCTTAACTCTGCATTTGATAATT 152442 30 100.0 35 .............................. TCCTCAGTTAAAGCACTTTTATCACATATTCGTCC 152377 30 100.0 36 .............................. TGAAAACAATATTATTTTCTATATTAGCATTGCTTT 152311 30 93.3 36 ...G...T...................... GATAATATGTTCTTATAGTTTTTTTTCCTTCAACTA 152245 30 93.3 36 ...G...T...................... TAAAATTTTTCTCCCATCATTCTAAAAATTATCTTG 152179 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.9 36 GTTAAACATTAACATAGGATGTATTTAAAT # Left flank : ACCTGCCTTTCTTAATTTTTTCTGTGGTAAGAAAATTATAACCTAAGGCTTGGTATTATCTATTATTTATTTTTTGGAAACTATAATTTGGCAAATGTATAAGTTTCGTTTGTACGAAACTTAGGT # Right flank : CATGAATATATGTGAGCAATAATAAATATGCATACAGTTGAACTATAATATAATCCTACACGGGGTTTGGGCGGAGCCCATTATCCTTCTATAACTCAGAAAAATTACTTTCTCAAAAAATAATAGAAAGTAAGAAAAGGTAAAATCTAATACACGGGGTTTGGGCGGAGCCCATTATCCTTCTATAACTCAGAAAAATTACTTTCTCAAAAAATAATAGAAAGTAAGAAAAGGTAAAATCTAATACACGGGGTTTGGGCGGAGCCCATTATCCTTCTATAACTCAGAAAAATTACTTTCTCAAAAAATAATAGAAAGTAAGAAAAGGTAAAATCTAATACACGGGGTTTGGGCGGAGCCCATTATCCTTCTAAACTACTACGAGGTTTGGACGAAGTCCATTATCCTTCTTTAACTCAGAAAAATTACTTTCTCAAAAAATAATAGAAAGTAAGAAAAGGTAAAATCTAATACACGGGGTTTGGGCGGAGCCCATTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACATTAACATAGGATGTATTTAAAT # Alternate repeat : GTTGAACTTTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 44957-45643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000113.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 44957 30 100.0 36 .............................. TTTATTTTTTCGACTTCATTCCATGTTGTCGCATGC 45023 30 100.0 36 .............................. AATATACAAGTTGGCTGTAGATTTCTAGCATTTATT 45089 30 100.0 36 .............................. TCAATATCATATATAGTACCATCAAGTTCGGCACAT 45155 30 100.0 36 .............................. ACCGGAAAGTGGTAAATACATTAAGAATGAGATAAA 45221 30 100.0 36 .............................. AACTATTTAACACATTTAATAGCAAATGATCTTGAA 45287 30 100.0 34 .............................. CCAGAAGAAGTAAGCTTGTACTCTGAACTAAGAG 45351 30 100.0 36 .............................. TGGTACTTGGGATAATGATGGTAACTACATAAGATT 45417 30 100.0 35 .............................. TACTTTTACACCTCCCTGTTACTTATTTTAAAATT 45482 30 100.0 36 .............................. GTAGTTATAATGTGTTGGGGTTCTACAACTGTAAGT 45548 30 100.0 36 .............................. AGTGTTAAGATATAGTCTATATAGCTTTATTTTGAG 45614 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAGACTTTGTTACAATAATTAAACTTATAAGCGGTGATTGCTTTGATGAAGAAACCTTAGGAATAAACGATAAAAACACAGAAAATCTAATACTATAATTATAAAAATAATTCTATATAGGATTTGGACATAAGCCCATTATTCGTCTAATCTTACACGAGGTTTGGGCGAAGTTCATTATCCTTCTAAACTTCTACGAGGTTTGGACGAAGTCCATTATCCTTCTTTAACCAAGAAAAATTACTTTGTCAATACACTAATATCTAAATAAGTTTTAAAATTCATAAAAGCCACCAATAAAGGCTGGAAAACTCCATCGGATTTTTCCAGCCTCACAAAAAATAAAAAGTACCTTAAAGCCTTGAAAATAAAAGTCTAGAGACTATTTTTTTATCCGTTTTTACAAAATGACAAAACGCCTGGAAAATTTTCAAGAAAAGCCTTTAATAATGCGGTGTAGAGGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGTG # Right flank : TAAGTATTCAGGCATAATCTTTAGTTCATGTGTCTTAGTTGAACATTAACATAATCCTACGCGGGGTTTGGGCGATAGCCCATTATCCTTCTAGAACCAAGATCAACCGTTTCTAAATTTACTAATGTACTCAGTAAGTTTAAAAACTAAATATAAAGTGTATCCATATATATGGAATGGTTGAACTATAACATAATCCTACACAGGGTTTGGGCGAAGCCCATTAGAATCATGAAGCAAGAAAAATCATTTTCTTAATGTAGTAATTTTCATAGAAAGTTTTTACCTCACATAAAAACCACACCAATAAAAGATAGAAAACTCCATCGGATTTTTCCAGCCTCACAAAAAATAAAAAGTACCTTAAAGCCTTGAAAATAAAAGTCTAGAGACTATTTTTTTATCCATTTTTACAAAATGACAAAACGCCTGGAAAATTTTCAAGAAAAGCCTTTAATAATGCGGTGTAGAGGAGTATAATGAAAATAAAGAATGGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 46152-46640 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000113.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 46152 30 100.0 36 .............................. TTGCCTATAGCATATAAATTATCTAAACTTGAACTT 46218 30 100.0 34 .............................. AAATGTTTATCAATAACACTTGTAAATTTATCTG 46282 30 100.0 36 .............................. AAAAGCATTTCCAGTGGCTTATCTGGATCAAAACGC 46348 30 100.0 36 .............................. ACATCATCCACAACTATTTTTATAGCTCCATTCCCT 46414 30 100.0 37 .............................. TAAATAAATCCGATAGACTATCAATCACTTGTTGGTC 46481 30 100.0 36 .............................. AAGTTCTCAGGTATAGTATGACGTCCTAAAGTATCG 46547 30 100.0 34 .............................. AATTTTTAATTTTTTATACAAAAAGAGGGCTTAA 46611 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AGGCATAATCTTTAGTTCATGTGTCTTAGTTGAACATTAACATAATCCTACGCGGGGTTTGGGCGATAGCCCATTATCCTTCTAGAACCAAGATCAACCGTTTCTAAATTTACTAATGTACTCAGTAAGTTTAAAAACTAAATATAAAGTGTATCCATATATATGGAATGGTTGAACTATAACATAATCCTACACAGGGTTTGGGCGAAGCCCATTAGAATCATGAAGCAAGAAAAATCATTTTCTTAATGTAGTAATTTTCATAGAAAGTTTTTACCTCACATAAAAACCACACCAATAAAAGATAGAAAACTCCATCGGATTTTTCCAGCCTCACAAAAAATAAAAAGTACCTTAAAGCCTTGAAAATAAAAGTCTAGAGACTATTTTTTTATCCATTTTTACAAAATGACAAAACGCCTGGAAAATTTTCAAGAAAAGCCTTTAATAATGCGGTGTAGAGGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGTG # Right flank : TTATGGTATTACCTCGATTTTAATCATACGAAAACCTGTTGAACTTTAACATAATCCTGCAAGGGGTTTGGGCGGAGCCCATTATCCTTCTAGAACCAAGAGCAACCGTTTCTAAATTTACTAATGTACTCAGTAAGTTTAAAAACTAAATATAAAGTGTATCCATATATATGGAATGGTTGAACATACACATCTGGAGGTTTGGACCAAGCCCATTAGAATCATGAACTGAGAAAAATCACTTTCTAAAAAACAAATCAAAATTAATGAGGTGAGAGAACTAAGATGGAGGTTTGGGCGGAGCCCATTATCCTTCTAAACTACTACGAGGTTTGGACGAAGTTCATTATCCTTCTTTAACCTAGAAAAACTACCTTCTCAAAAAATGTGAAAAACCTTAATGAAAGGCAGAATTAAAACCTATATTAGAGGTTTTAAAGAACTTACCATGACATTACCTGAAACAGTTAATCACTTCATGTACTAATTTCACTAATAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1671-3399 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000153.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1671 29 100.0 36 ............................. AGGTAACTCATATACGTCAAAAATCGATATACCAAA 1736 29 100.0 36 ............................. ACGGGTTCATTTTGATTTACGATTGTTTGTAATGCA 1801 29 100.0 35 ............................. TTTGCTTTACGTCTTATATTATATGCGTAAAGACT 1865 29 100.0 36 ............................. TTGTATATAAAGGGTTAAACTCTTTTGCTTTAGCTA 1930 29 100.0 36 ............................. ATACATCATAACCACTGGCTTAGAGGGCGATACACG 1995 29 100.0 36 ............................. TTATAAAATAGCTTGTCTTCGATAAATCTTTCGCTT 2060 29 100.0 36 ............................. TTGGTATGACAAAAAATTATTTCTTGATTTATAAAA 2125 29 100.0 37 ............................. AGTTGACTAGCTGTTCCTACTGCTGTGTTTACTAAAC 2191 29 100.0 36 ............................. ATAAAAACGACAATTAACCATGATGATACGGCTATA 2256 29 100.0 36 ............................. TTATAATTTTTTGGAGAATATGTCATTTCAAAAACT 2321 29 100.0 37 ............................. TCTTTATTATCTTACCTTTCCATGACGTTTCGGCACA 2387 29 100.0 37 ............................. TTTATTAGTCCACTCATTACGCCAAATACGTTTGAAT 2453 29 100.0 37 ............................. TTTGCTTTTTTGTACTTAATTCTTGTGCTTAAACCTG 2519 29 100.0 36 ............................. TAGACAAAAGTTGGCCAGAATGATATTAGAAAATGG 2584 29 100.0 40 ............................. CCCTTGCCCGCATTACATAAATCTGTTATATACTGACTTA 2653 29 100.0 37 ............................. TCAAGTAACACTAATGAAAATGATTTTTGGATAATGG 2719 29 100.0 35 ............................. GTTGGAGAAGCAAGAATGTCTTTAGCTGAAAGCAA 2783 29 100.0 37 ............................. GTAGTAACTGCTGTAGCTAAAGTTAGAATAGCTTTAT 2849 29 100.0 37 ............................. TATTTAGATACTGCAGGCTATGTAGATACTGAAGGAT 2915 29 100.0 38 ............................. GTAAAAGAAATAGTTGGAAATTTAAACGAAGATGAACA 2982 29 100.0 37 ............................. TCCAAAAGTCTTATCATTTGTGACTTTAACTTGAATA 3048 29 100.0 35 ............................. TTATTTTCTTATTTATATTAGTATAATTCATCTTA 3112 29 100.0 36 ............................. GTATATTCCTCAAACATAGATACTATTTCTTTATAA 3177 29 100.0 37 ............................. TTAGCAGATTTAAAAAATGGAAAAGACTTTAATACAA 3243 29 100.0 35 ............................. AGTTTCAGTTAGTTAAACTATTGTAATAATAGAAA 3307 29 100.0 36 ............................. TCTTAAAACTAAAAGAAAGTAGGAATAAAGCCAAAG 3372 28 96.6 0 ..................-.......... | ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.9 36 GTTTATAGATAACTATGTGGTATGTAAAT # Left flank : CATTTTATTGGTGATGAGGTTTATAAGCCATTGAAAGCGTGGTGGTAGTATGTTTGTTATATTGACTTATGATGTTGGAGAAAAAAGAGTGAATAGGGTAAGGAAAATTGTGAAAAAATATTTAATATGGACACAGAATTCTGTATTTGAAGGAGATATAACAGAAGCTAAATTGCATAAATGTTTGTCTGAAATAAGTAGAAATACTATAAGGGCTGAAGATTCTGTTTATGTTTACAGAGTGCAGAATCCTAGAAATATAACGAAAGATATAATAGGAGTAGAAAAGAATTATGATGAACTATTTCTCTAAAAAGTTTTGCAGTGAACCTCATTTTTTATAAAATGTCATTAAAGCCTTGTGGTTAAAGGAATAGAGGACATTTGTTAAAAAAATCACATGCACTACTGGAGGTTCACTGCAAAAGAAGTGAAATTAAAGGTGTTTTGAAGTCATGAAAGCTAGTAAAATAGCCATTTTTATTTATGCATATTTTGGG # Right flank : TATACCAGAAGAAAAATACAAAAGATTTAAGTACAGGCGTTTATAGATAACTATAAATGTCAACTTAAAAATGTAACTTTTTGATCATTTAAGGATGTAGTTTTTTAATCCTCATCTTGCTTTAAATGATCTTTTAATCTGTATGATTTTCTATTAATTGTAACCACGTGAGCATGATGTAAAACTCTATCTAAAATAGCACTAGCTATAACGGCATCATAAAAAATATCATCCCAAGAATTAAAATTTATATTTGTAGTTAAGATTGTACTTTTTTTCTCATATCGCATGTCTATTAATTGGAAGAATAATTTTGAATCTTCTTTATCTATAGGTAAATAACCTAATTCATCAATGATAAGAAGCTTATATTTACTAAAGTGCTTAAGTCTAGCATCTAATCTATTCTCTAAATTTGCTCGCTTTAGCTGTTGCAACAAATCATTACACTTAATAAAATACGTACTGTAACGACGCTTTGCTGCTGCGATTCCTATGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGATAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4843-4554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000144.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4842 29 100.0 36 ............................. GTAGTTAATCTGACTCCATTTGTATCATAAACATCT 4777 29 100.0 36 ............................. TGGGACTCTTAAGTAATAATAAAACTACTTCTATTA 4712 29 100.0 37 ............................. TATGTATTATTCCTCCTAAAAATTTTTATTTTTAATA 4646 29 89.7 36 ...............G..G.....A.... TTTCAAAATATTGACATTTGATCTTGTCCAAAAAAT 4581 28 79.3 0 ..............-.T.....T..CTT. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 93.8 36 GTTTATAGTTCTTATAGAAGAAGTGAAAT # Left flank : AAGAGTATTATCAGCTAACCCTTTTAAATAGTTAATTAAGTTTATAGTTCTTATGGAAGAAGTGAAAGTTTATAATTGCTTTAGAGAAATCACTCCATGATTCAGTTTATAGTTCTTATGTAAGAAGTAAAAGTCTGATACAATATTGACTGTGTGTGGTGTGTAGTTTAGGTTTATAGTTCTTAAGAAGAATTGCTTTATTATGACTGATACAAAATTTATTGTTTCACTATATTTTATAAAAGAAAATACAAATAATAAAAATTGTAGTAAACTAAGTATTAGAGCATAGAAGCATAAAAAATAATATTTTAAAGTTGCAGTGAACCTATTTTTTTATAAAATGACCTTTAGCCTTTTAAAATAGAGGCTTTGACACTGAAAATTTTGAAAAGCAAAAAACACTACTGTAGGTTCACTGCAAAAGGTATCAATTTTTAGTGGATTGTAAAGCTGAAAAGTACTGAAAATAGGGAGTTTTATAATCAGCAAAAGTTGGG # Right flank : ATTATGACTGATACAAAATTTATTGTTTTAATATATTTTATAAAAGAAAATACAAATAATAAAAATTGTAGTAAACTAAGTATTAGGGCATAAAAACATAAAAAGAATTTTTTTAAAGTTGCAGTGAACCTATTTTTTTATAAAATGACCTTTAGCCCTTTAAAGTAGGGGCGTTGACTCTGAAAATTTTGAAAAGCAAAACACACTACTGGGGGTTCAATGCAAAAGGTATCAATTTTTAGTGGATTGTAAAGCCGGAAAGTATTGAAAATAGGCAGTTTTATGATCAGCAAAAGTTGGGTTTATAGTTCTTATAGAAGAAGTGAAATTCCATTTGCTTCATATCTTCATTACGCTGCATCATCGTTTATAGTTCTTATGGAAGAAGTGAAATTTCATAGGTATTAAACTTTTTACAAGTAAATTCTTAGTTTATAGTTCTTATAAAGAAGTTGAAAAATTTACATCTCTAAGTTGTAGTACTATTGTTTATCAAAAAA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGTTCTTATAGAAGAAGTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 5499-5144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000144.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5498 29 100.0 36 ............................. TTTTCTAATCTACTAGATGTTTTATATATCTTGTCT 5433 29 100.0 36 ............................. TAGCACACAATTAAAGTAGTTATATTCTTTCTCTTT 5368 29 100.0 36 ............................. AGTATTATCAGCTAACCCTTTTAAATAGTTAATTAA 5303 29 100.0 36 ............................. TTTATAATTGCTTTAGAGAAATCACTCCATGATTCA 5238 29 93.1 38 ................T.......A.... TCTGATACAATATTGACTGTGTGTGGTGTGTAGTTTAG 5171 28 75.9 0 ..............A.-.....T..CTTT | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.8 37 GTTTATAGTTCTTATGGAAGAAGTGAAAG # Left flank : ACTCCAGAAGATACGGAATTTATTGAAAGCTTGAAAAGTAACATGTTATCAAAATATAGAGCCTTTTATAATGAAAACTATGAAGGAAAACTTAATATAGCAATAACTGATAAAAGCAAAGTGAAAAAGAAAATAGACAAGTATAAGAATTGGATATATGAAGGATATTTAAGTGGATTTTTAATAGAAGGGGATCAGGATATAGTTAATTTAGCATACAGTGCAGGACTTGGCAGTAAAAATGCTCAAGGCTTTGGATGTATAGAATTGTTTAAAGATTTAAATAACCTGAGAAATTACAGAAGAATTTTTTAAAGTTGCAGTGAACCTATTTTTTTATAAAATGACCTTTAGCCCTTTAATTTAGGGGCTTTGACACTGAAAATTTTAAAAAGTAAAAAACACTACTGTAGGTTCACTGCAAAAGGTATCAATTTTTAGTGGATTGTAAAGCTGAAAAGCATTGAAAATAGGGAGTTTTATGATTAGCGAAAGTTGGG # Right flank : ATTATGACTGATACAAAATTTATTGTTTCACTATATTTTATAAAAGAAAATACAAATAATAAAAATTGTAGTAAACTAAGTATTAGAGCATAGAAGCATAAAAAATAATATTTTAAAGTTGCAGTGAACCTATTTTTTTATAAAATGACCTTTAGCCTTTTAAAATAGAGGCTTTGACACTGAAAATTTTGAAAAGCAAAAAACACTACTGTAGGTTCACTGCAAAAGGTATCAATTTTTAGTGGATTGTAAAGCTGAAAAGTACTGAAAATAGGGAGTTTTATAATCAGCAAAAGTTGGGGTTTATAGTTCTTATAGAAGAAGTGAAATGTAGTTAATCTGACTCCATTTGTATCATAAACATCTGTTTATAGTTCTTATAGAAGAAGTGAAATTGGGACTCTTAAGTAATAATAAAACTACTTCTATTAGTTTATAGTTCTTATAGAAGAAGTGAAATTATGTATTATTCCTCCTAAAAATTTTTATTTTTAATAGTT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGTTCTTATGGAAGAAGTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 818-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000185.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 817 31 100.0 34 ............................... ATTCTAATTGCGGTAATAGCTGGATTGAATCACC 752 31 100.0 35 ............................... TTAGAAGCAATAGATGATATTAGTTTTAACTCTAT 686 31 100.0 35 ............................... ATTGCATTAGCTAAAGGAAACAATACAAACGAAAT 620 31 100.0 35 ............................... TTAGAAGCAATAGATGATATTAGTTTTAACTCTAT 554 31 100.0 35 ............................... TTTATATTTTGTTTGAAATTTTGGTACTCTTGTTT 488 31 100.0 35 ............................... ATTGCATTAGCTAAAGGAAACAATACAAACGAAAT 422 31 96.8 33 ..............................G TATTATCAACATTGGCAGCTATTAAAAAATCAT 358 31 100.0 33 ............................... TGAGTGGAAAAAGACTTCATCGGGGGCTAGAAA 294 31 100.0 36 ............................... TGATAGGTATTGTTCGTACTTGTTAATTTCTTTATA 227 31 100.0 34 ............................... CTAGATGTATATGGATAAAAAATTTCGATATTGG 162 31 96.8 0 ......................A........ | ========== ====== ====== ====== =============================== ==================================== ================== 11 31 99.4 35 ATTTAAATACATCCTATGTTAATGTTCAACT # Left flank : CTGTTTCATATATATGGATGCTCTTTATATGTAGTTTTGAAACTTATTGAGAACACTTGTATATTGAGAGAGTAATTTTTCTAGGTTAAAGAAGGATACTGGACTTCGTCCAAACCTCGTAGTAGTTTAGAAGGATAATGGGCTCCGCCCAAACCCCGTGTATTAGATTTTACCTTTTCTTACTTTCTATTACTTTTTGAGAAAGTAATTTTTCTGAGTTATAGAAGGATAATGGGCTCCGCCCAAACCCCGTGTATTAGATTTTACCTTTTCTTACTTTCTATTACTTTTTGAGAAAGTAATTTTTCTGAGTTATAGAAGGATAATGGGCTCCGCCCAAACCCCGTGTATTAGATTTTACCTTTTCTTACTTTCTATTACTTTTTGAGAAAGTAATTTTTCTGAGTTATAGAAGGATAATGGGCTCCGCCCAAACCCCGCGTAGGATTATATTATAGTTCAACTATATGCATATTTATTATTGCTCACATATATGCATG # Right flank : TCAGGGTGCAGTGGTCAAGCTTTTTTGTAACGCTTTAACCTAATATTATCAATTTCCATATCTTGCCTCAAATGGAGTAAGTCCATTGTTATATGTATGAGGTCTTACATGGTTGTACCATGCATAAGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAATGTTCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 11441-10170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000186.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11440 29 100.0 37 ............................. ATGCACTTACCATGCCAGAGCAATTTAAATTTATATC 11374 29 100.0 36 ............................. ATAGTTAATTCTATTGAACAAGGAAATAAAATTAAT 11309 29 100.0 36 ............................. TTAAGACAATATTTGAGTTTCGCTATAAGTGAAGGA 11244 29 100.0 36 ............................. TATCGTATATTTATCTAAACCAAAATCAAAACCACT 11179 29 100.0 37 ............................. ACATGTCAATCCTAAAAACATGAGCATTTAAGAGTAA 11113 29 100.0 36 ............................. AATAAAGCCGAAGCACATTTGAGTTATAGGCAGAGT 11048 29 100.0 36 ............................. TTAGCATAATTTGCGTCGGTGAATTTTAATGTCATA 10983 29 100.0 36 ............................. AAAACAAAAGTAAGTTTAAAATGGTTGACGTTGTAC 10918 29 100.0 37 ............................. TCTATAACATCGCCAAAATCCATTACAGCTTCAATTC 10852 29 100.0 35 ............................. TTTAATTACCTTCCTTCTTCAAAAATTGCTTTTTA 10788 29 100.0 36 ............................. TGTAAACAACTTGCCCGTTAACATTATCAATTTTTA 10723 29 100.0 36 ............................. TGTAAACAACTTGCCCGTTAACATTATCAATTTTTA 10658 29 100.0 37 ............................. CTTACAAACACCGGTTTTGTACGTAGAGAATATAGAA 10592 29 100.0 37 ............................. CGGAGTATGTGCATAACCACCCCAAGCAAAATTTTTT 10526 29 100.0 37 ............................. TTCGCAAACTATTTAGTAATGACGCTGTGTTGTCCTT 10460 29 100.0 35 ............................. GCAGTACATTCTCAATGTGAAGATAGGGGGCACAG 10396 29 100.0 38 ............................. CGTAATAGGTATTAACATCTCGACCATGCGACTAGCAT 10329 29 100.0 37 ............................. TTTCAAGTTGAGTACTTAACGCGGTGATACGTTGGTC 10263 29 100.0 36 ............................. TACATACAATCACAATTATCAGCAGACCAACTCACT 10198 29 86.2 0 ......................AA..CC. | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 99.3 36 GTTTATAAATAACTATGTGGTATGTAAAT # Left flank : ATGATAAAAACTGTTGAAGAGCTTAATCGTGAAGCAAAATCCATATCTGAAATATATAACAAAATGGAGACACTTGCAGCTATAGCAGAGGAAAACTCAGCTTCATCACAGGAAGTAAGTGCAAGCGTAACAAGCTATACAGAAGAGATAGTCAAGCTTACGGATAAAATAGGAGAGTTTAAAGGTATTGCTGAGAATTTTAGAAATGATTTGAAGAGGTATAAAATTTAGGTGTGTTTGTGTTATTTGAACTTAGGGTGCTTATTTATGATAAAATATAGATAAGCACCCTAAGTTTGTATTTAAGGTGGATAGAATTTTGCAGTGAACCTCATTTTTTATAAAATACCGTTAAAGCCTTGCGGTTAAAGGTATATAAAGCTGTTGTTAAAAAAATCACATGCACTACTGGAGGTTCACTGCAAAAGAAGTGAAATTAAAGGTGTTTCGAAGTCATGGAAGCTAGTAAAATAGTCATTTTTATTTATACATATTTTGGA # Right flank : AAAAATAAAATTAATTTTTAAATGCAATAAGTTTGATATTAGAGACAAATTAGTATTATAATGGAATAAAAATAAGCGATAGAAGGAAAATAGCATGAGTAAATTTTCTAATATACTAAAAATGATAATTTTACTCCAAAGTAGAGGTAAAATGAAAATAAAAGATATTTCAGATATTCTTGAAGTTGATGAGCGTATGGTTAGAAAATACAAAGAAGATTTGGAAAAAGCTGGGGTATATGTTGAATCAACGCGTGGAGTTGATGGAGGATATGAACTGAAAAACTTTGATTATCTAATGAAAGCAGATATAACAGAAGAAGAACAAGCAGCACTAGAACTTGCAGTTATGCAGCTTGAAAGTAATAAATTTGCATATTTAAAGAATATAAAAGGGTTAACAGATAAAATAAATGCTATAAAGAATTATAAAAATAAAGTACAAGGTAACATGAACTACTTTGTAAAGACTAGTGATTTTTCTGTTAGAGAGAGTGAGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAAATAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 161-780 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000021.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000021, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 161 30 100.0 37 .............................. AAGCAAACCGTGGTAATATTAATTATTGGAGGTTTAT 228 30 100.0 34 .............................. TATAAAATTTCATCAATATCTCTATCTGTAAACT 292 30 100.0 35 .............................. GAAAAAAATAAGAATGAATTTAACGTGGATCTTGA 357 30 100.0 35 .............................. TCCCATGGATGCTTTTCTAGGCTACCATCTTTGAA 422 30 100.0 36 .............................. AATTCGTCACGGTCTGCACCATCAGTTGTTTTTAAT 488 30 100.0 36 .............................. GAAAATACGAACATCTGAATTCAATACCGTCTGTGT 554 30 100.0 36 .............................. TAGGGTATTGGCAAAATGCAATAGCTGGAGAAGTTA 620 30 100.0 35 .............................. AGTAAACAAGCTTCTGGCAATCTAACGTTACTAAA 685 30 100.0 36 .............................. ATATAGAAGTAAAGTATATTGTATGCATTTAGATTG 751 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 ATTTAAATACATCCTATGTTAAAGTTCAAC # Left flank : AAGGCGTATAATTTTTGTCTTAAATTCTTCTTCATAAGCTTTCTTTTTCATAATGATTACTCTCCTCTTAATAGATATTATTATAATCTATTAGGTTGAGCTGTTACAACTTTATTATACCATTGCAGGGTAGAGTGCAAATTGTATTGTATTATAACTTA # Right flank : CTACTGAAAACAAGCCATTCTTTATTTTCATTATACTCTTCTACACCGCATTAATAAAGGATTTCTTTGAAATTTTTCCAGCTGTTTTGTGATTTTATAAAAATTCATAAAAAATAGCCTTTAGACTTTTGATTTCAAAGCTTTGAGGTACTTTTAATTTTTGATGCGGTTGGAAAAATTCGATGGAGTTTTCTATCTTTTGGGGGTGAGTTTTTGCATATGTGGGTTAGAAAATTATTGGTATGTTAGTTTATTGATAAGGTGATTATTTCGGTTCATGATTCTAATGGGCTTTGCCCAAACCTCCATCTTAGTTTGCTCACCTTATTAGTTCTGATTTGTTTTTTTGAAAGTGATTTTTCTCAGTTCATGATTCTAATGGGCTTCGCCCAAACCTCCATATGTGTATGTTATAATTCAACTGTTTCATATATATGGATACTATTTATATGTTGTTTTAAAACTTATCGAGAACACTTGTATATTGAGAGAATAATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAAAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1874-1378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000021.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================================================================================================================================================ ================== 1873 31 100.0 34 ............................... CAAATGCATTTGATATTGCTTTCTTTACTTCTGT 1808 31 100.0 35 ............................... TCTGCGCGTTACGGGTATTCTGCCCATAATCTAAA 1742 31 100.0 34 ............................... AGTATGGTGGTGTGTTGGTACGTGGGCATCTTCT 1677 31 100.0 35 ............................... TAAAATATCTAAGTAGAGTTGTTAATTATGAATTA 1611 31 100.0 172 ............................... GGGCATGTGGAAATGCTGATGAATTAAGAAAGGGTTGAACATTAACATAATCCTACAAGGGGTTTGGGCGGAGCCCATTATCCTTCTAGAACTGTGAGTAACCATCTCTAAGTGTATTAATTCACCAATAGGTTTTAAAAGTATATATAAGATATTTATTATAATAGAAACA 1408 31 96.8 0 ..............................A | ========== ====== ====== ====== =============================== ============================================================================================================================================================================ ================== 6 31 99.5 62 GTTGAACATTAACATGAGATGTATTTAAATT # Left flank : AAAATTACTCTCTCAATATACAAGTGTTCTCGATAAGTTTTAAAACAACATATAAATAGTATCCATATATATGAAACAGTTGAATTATAACATACACATATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACCAAGAAAAATCACTTTCTAAAAAACAAATCAGAACTAATAAGGTGAGCAAACTAAGATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTAAGAGAAATCACGTTCGTAATGTAGTAATTTTCATAGAAAGTTTTAACCCCACATGCAAAACACACCAATAAAAGATAGAAAACTCCATCGAATTTTTCCAGCCTCACAAAAAATAGAAAGCATCTTAAAGCCTTGAATCCAAAAGTCTAAAGGCTATTTTTTTATTCATTTTTACAAAATAGCAAATCACCTGGAAAAATTTCGAAGAAATCCTTTATTAATGAGGTGTAGAAGAGTATAATGAAAATAAAGAATGGCTTAAAACCAGTG # Right flank : AGCCTATTTTCTGTAAGCAATTGGTTAAAAGACAGTTGAACATTAACATAATCCTACACGAGGTTTGGACGAAGTCCATTATCCTTCTTTAACCTAGAAAAATTATTCTCTCAATATACAAGTGTTCTCGATAAGTTTTAAAACAACATATAAATAGTATCCATATATATGAAACAGTTGAATTATAACATACACATATGGAGGTTTGGGCGAAGCCCATTAGAATCATGAACTGAGAAAAATCACTTTCAAAAAAACAAATCAGAACTAATAAGGTGAGCAAACTAAGATGGAGGTTTGGGCAAAGCCCATTAGAATCATGAACCGAAATAATCACCTTATCAATAAACTAACATACCAATAATTTTCTAACCCACATATGCAAAAACTCACCCCCAAAAGATAGAAAACTCCATCGAATTTTTCCAACCGCATCAAAAATTAAAAGTACCTCAAAGCTTTGAAATCAAAAGTCTAAAGGCTATTTTTTATGAATTTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 3033-2473 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYW01000021.1 Clostridium aurantibutyricum strain DSM 793 CLAUR_contig000021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================= ================== 3032 30 100.0 36 .............................. ATTTTATTGCAATATACTAAAGTTAAAAAATAATAT 2966 30 100.0 36 .............................. CATTAAAATAATTCTGCCGCCTAACCAGCGTATAGA 2900 30 100.0 35 .............................. TCGATACACTTTTTCCTGTTTCGTTTGCGAATTTT 2835 30 100.0 34 .............................. CCCGAAAATATACAAACTCTATTTCTAGCAGCTC 2771 30 100.0 36 .............................. TAAAACATCATAGTCAATATCTTATTTACTTTTATA 2705 30 100.0 34 .............................. TGGGCATGTGGAAATGCTGATGAATTAAGAAAGG 2641 30 70.0 103 ...............A.A.G.GG...GGGC GGAGCCCATTATCCTTCTAGAACTGTGAGTAACCATCTCTAAGTGTATTAATTCACCAATAGGTTTTAAAAGTATATATAAGATATTTATTATAATAGAAACA CATCCT [2619] 2502 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================================================= ================== 8 30 96.2 45 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TCTAATATAAGGGGTTTGGGCGAAAGCCCATTATCCTTCTAAACTTACAAGGGGCTTGGGCTTCAGCCCATTATCCTTCTTTAACTAAGGAAAGAACTTTCTCAAAAGAAAACAAAAGTTATTATTATAACCCAGAAAAATCACTTTCTTAAAAAATAATAGGAAGTTAAGAAAAAGATAAAATCTAATATAGGGGCTTGGGCGAAAGCCCATTATCCTTCTTTAACCTAAAATATTCACTCTCTCAATATACAAGTGCTCTTAATAAGTTTTAAAATCACATATAAAACCTAGCCTCCAACAGATAGAAAACTCCATCGAATTTTTCCAGCCTCACAAAAAATAAAAATCACCTTAAAGCCTTGAAGTTAAAAGCCTAGGGGCTATTTTTTTATCCATTTCTACAAAATCACAAAACGCCTGGAAAAATTTCGAAGAAAGCCTTTATTAATGCGGTATAGAGGAGTATAATGAAAATAAAGAATGGCTTGTTTTCAGTG # Right flank : AAGCCTATTTTCTGTAAGCAATTGGTTAAAAGACAGTTGAACATTAACATAATCCTACACGAGGTTTGGACGAAGTCCATTATCCTTCTTTAACCAAGAAAAATTACTCTCTCAATATACAAGTGTTCTCGATAAGTTTTAAAACAACATATAAATAGTATCCATATATATGAAACAGTTGAATTATAACATACACATATGGAGGTTTGGGCGTCAGCCCATTAGAATCATGAACCAAGAAAAATCACTTTCTAAAAAACAAATCAGAACTAATAAGGTGAGCAAACTAAGATGGAGGTTTGGGCGGAGCCCATTAGAATCATGAACTAAGAGAAATCACGTTCGTAATGTAGTAATTTTCATAGAAAGTTTTAACCCCACATGCAAAACACACCAATAAAAGATAGAAAACTCCATCGAATTTTTCCAGCCTCACAAAAAATAGAAAGCATCTTAAAGCCTTGAATCCAAAAGTCTAAAGGCTATTTTTTTATTCATTT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //