Array 1 114520-105663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037985.1 Rathayibacter toxicus strain SA03-19 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 114519 29 96.6 36 ............................G AGGGCGCGTTCGCCGGTCAGGCGTGGGAGGCTGTCA 114454 29 96.6 33 ............................G CCCCACCAATAATACCGGCTATGCCACCAAAAA 114392 29 96.6 33 ............................A GGGTTTTGCTTCCTTTTATTGATTTTGCTTTTA 114330 29 96.6 32 ............................T GTGATGAGGTGCGAACCCTCCTAGAGGCTATA 114269 29 100.0 32 ............................. CGGTCGGGTCGTTAACCCCGCGGCCCGGCCGG 114208 29 100.0 33 ............................. GCTAGATTGCGTGATAGGATCACCTCATGCCCA 114146 29 100.0 33 ............................. CGCATGGGATTCTTTTGTTAGGCTATATGAGAA 114084 29 100.0 32 ............................. ATTACCACGCTGACACCCCATGTCAAGAGGTT 114023 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 113962 29 100.0 32 ............................. AAGCGTGCCATGCTTGTCAACAACAAGACCCC 113901 29 96.6 32 ............................G TGGGGTCACGAGCTCACATCCGAAAACACGAG 113840 29 96.6 32 ............................T AGCGGCCCGAGTACGGTTGTCCATACCGCGGA 113779 29 100.0 32 ............................. CAGAAGATGGTGTTATCTACATCCCACTAGAG 113718 29 96.6 32 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACAT 113657 29 96.6 32 ............................A GCATCCGCGGGAGGACGAGACAGACCGTTACT 113596 29 100.0 32 ............................. CTTACCCGCGATTCCGCTGGCCCTGCCGGTAT 113535 29 100.0 32 ............................. ACGGATAGCCTCCTGCCACGGCTTCACCCTTT 113474 29 96.6 32 ............................T TCATTACTGCCGGTGGTTCGGATCCAGATCCG 113413 29 100.0 32 ............................. GCTTTAGGGGCCGCGAAAGCGCCAATAAACGC 113352 29 100.0 32 ............................. GCCATCGCTGCGGGTATACAGTGGCTTAATGG 113291 29 100.0 32 ............................. ATTTACTGGCAATCTCCGCGACATCGGGCTGG 113230 29 100.0 33 ............................. CAACCCCGACCATCGATAACCTCGCCGTCAGGA 113168 29 96.6 32 ............................A TTCTTCTTCGCGGCCAGGTTGTCCCCGCGGGA 113107 29 96.6 33 ............................G CTTCGCAATATGACAAAGGCCAGCTAGCTAAGG 113045 29 100.0 32 ............................. GATGAAATAGCATCCCAGTTATTGGCAGTTAT 112984 29 96.6 33 ............................T AACTATGCCTATATGGTCAGCGATTACCTGCAA 112922 29 100.0 32 ............................. TGAGAAGCTTGCTGGCCGCAAACGCCTGATTG 112861 29 96.6 33 ............................T GCTATTAACGCGCAGTCTAGGAAAACCCACTGC 112799 29 100.0 33 ............................. TTTCGCCCCAGGGGATCATCGGCAATCCTCGGA 112737 29 100.0 32 ............................. CTGCGACGACGCAGGGTAAGCAGAAAGCGTAT 112676 29 96.6 33 ............................T CTGCGGACAGGATGTCTTATTTTGAGTGGTCTA 112614 29 96.6 32 ............................A GGATTCTTCCGCGACGGCTTATATGATTTTTA 112553 29 96.6 32 ............................T ATCATCGAAAAAGAAAACAATACACCCGAATA 112492 29 100.0 32 ............................. TTCTGAGGTCCCCGGTGATTCGAAAAGCGTGC 112431 29 96.6 33 ............................T TGATGTTTGCGCCGCGAGATTGTTGGCGAAACC 112369 29 96.6 32 ............................T GGGGCGACCGCATTAAACGGAAATACCAACAT 112308 29 96.6 33 ............................T AGCGTGGCTTCTCTTATCCGTCAGCATCAAGAG 112246 29 100.0 33 ............................. AGTCGCAGGATACTCCGTCGCTGGCCCCAACGG 112184 29 96.6 32 ............................G CGGGTTAAACCGTGGCAGGAGGCTATCCGTGT 112123 29 100.0 32 ............................. GAAAGCGGCGCCTATACGCTTAAGTGCATCGA 112062 29 96.6 34 ............................T GAGTTGCTGGCCCCTGATGGTTCTCCGCTGCTTA 111999 29 100.0 33 ............................. TGTCCAGCAACAGCGTCGCCGACTACTGTCTGA 111937 29 100.0 32 ............................. CATCAGGGGCCAACAACTCGTTCTCCATAGGA 111876 29 96.6 33 ............................G TACCAGTAATACGGTACCCGGCGAAAGGGTTAA 111814 29 100.0 32 ............................. GACCTCCCGCGCTTCTTCAGGCCAACCTTTTT 111753 29 96.6 32 ............................G TAATCTCGCGCGGCGGAGTCCAGCCAGTCCAC 111692 29 96.6 32 ............................T GCGTTTTTGTTCGAGGATGTGAGCGCGCCAGA 111631 29 100.0 32 ............................. CACGGGGACGGTGATGCGACGCGCACGAAGCA 111570 29 96.6 32 ............................G TTGTATCGCTGCGTTAATGATCAGCGGGAGCG 111509 29 100.0 32 ............................. TTTATATTTAGACATTATTGTGGCCCTTAATC 111448 29 96.6 32 ............................A TACGGGGAAACACGCACGTTTACAGCCACACA 111387 29 100.0 32 ............................. AGAATTCAATGATCCGGTAAAGAAGTTGGCGA 111326 29 96.6 33 ............................T GATTTCGGCGGCGGCCGTATCGTCATTGATGGC 111264 29 96.6 32 ............................A TGGTTCCTAGTGATGGTGTTGCGCCCTTCTCG 111203 29 100.0 32 ............................. ATATGTGACGCCTAAAATTGGTGTTTTACTGG 111142 29 96.6 32 ............................A TGAAGCGGGGCAGCCTCGCCCCTACCGGCAGT 111081 29 96.6 32 ............................A CTCAGTATTAAAGTCTTGTATTCACTGATCAT 111020 29 96.6 32 ............................T CAGCATCCCCAGCTTTATCCCTATAGATCTCC 110959 29 100.0 32 ............................. ACATCCGGTCGCGATTCAAATAGGTGATTTGG 110898 29 100.0 32 ............................. CGTCTCGTCACAACCCGCCGCAATCACCGACG 110837 29 100.0 32 ............................. CGGGACCTCTCTGCGTCGCGTTAGAGTAAACG 110776 29 96.6 32 ............................G CCAGGATGGAGCGTCGTCCCGCTGACCCGATC 110715 29 100.0 32 ............................. GCCACGACCATATCGGCTTCCGATCCGGCACC 110654 29 96.6 33 ............................A AAGCTTCAGAAGGCGCTGGAATTTGGCGATAGA 110592 29 96.6 32 ............................T AACCTTAAAAATGGCTGTGCAGAACATGTGCA 110531 29 96.6 32 ............................G TGGTGGAGAGGTATGAGGGCGGCGCGACTCTC 110470 29 100.0 32 ............................. ATCATTACCGCGGTTATTACCCTGATAATCAC 110409 29 100.0 32 ............................. ATTGCCGCACTAGTCACCAATAAAGAACCTAT 110348 29 96.6 32 ............................G CCGACACCGACGGCTGCAATCTGCGCGATATA 110287 29 100.0 32 ............................. ACTTGGGTTTCCGAGTATGGCGACTGGGCATC 110226 29 96.6 34 ............................T AAATAACCTTCGGCTCCCCGGCAGACACATCGCG 110163 29 96.6 32 ............................A TACGGGTGTGGGGGGCATGTATATAGTAGGGG 110102 29 96.6 32 ............................T GTGGCTGGGTTGGTACTGCTGGGCGGCGCGAG 110041 29 96.6 33 ............................G TTTTTTATCAGTAGCAAAAGCGGCGATCTGTGG 109979 29 96.6 32 ............................G CCGCGGATGACCCGACGCGAGGATGCGTCCGC 109918 29 96.6 32 ............................G ATATGGAGTGTCGGCCACTTCGCCGGGGAATT 109857 29 96.6 33 ............................T TAAACGGGCCGTTAGAGGTGAATGGGGCGACCG 109795 29 96.6 32 ............................T ACGTAGACGGCTGGCGCGACTCATATGTCATA 109734 29 100.0 32 ............................. ATGCTGTACTGTCGTAAGGCTTTTCAGGGCCC 109673 29 100.0 33 ............................. GACTCGAACATTCCATAACGTGTCCGAGTCTTA 109611 29 100.0 32 ............................. ATGCTGCCGCGCCTCATCGAGATGGGCATACA 109550 29 100.0 32 ............................. GCGACGCAAAGAGGTCCCGGCTATATTAAAAG 109489 29 96.6 32 ............................G CGGCCCTATCGTTGATGACTGGCGTCCTGCAA 109428 29 96.6 32 ............................A GAAAATGTCGCCCCGCCGACCTTCAAAAGCGC 109367 29 100.0 32 ............................. GCGCACACTCCCACACGAGTATTGTGAGATCA 109306 29 96.6 33 ............................G TGTTTGCCGCATCGAAGGGGTGGCCGTTCTTGC 109244 29 100.0 32 ............................. CCTATCCGCCACCTTATTCTCGGCATCAGAAT 109183 29 100.0 32 ............................. ATGTCGTCCTCTTCCTGTAAAAATGTTGTGCC 109122 29 96.6 32 ............................T ACGGCGACGCTTCTTCGCAGGCCGCTGCTGCT 109061 29 96.6 32 ............................T CGCCACCACATCAGTATTTTGATCGAAAATCT 109000 29 100.0 33 ............................. TTTTGAGCTAAAATTTAATGACAGTTTTTTTGA 108938 29 100.0 32 ............................. GCTTCGAGACGGACGGTATCGTCCCGCGCCGA 108877 29 93.1 32 .....................G......T CATCCAGCTGTGTATCTGTCCACTGTCTCCAC 108816 29 96.6 32 ............................T AGACACCCTAGTCTTAGATAAACACGTCGACC 108755 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108694 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108633 29 96.6 32 ............................T ATTATCTTCCGGTTCAACAATAGCAAAACTTA 108572 29 100.0 32 ............................. TCGTACTCTGGCATCAGAAGGGAATCTCACTC 108511 29 96.6 32 ............................G TCCATCCCGCGGTGCGGATTGGGGCGGCCTTC 108450 29 96.6 32 ............................T GTGACGCGTGCTGTACCGGAAACGATTTCGGG 108389 29 96.6 32 ............................G CCCAGATGCCTACAGATATTGGGGCTGCATAC 108328 29 96.6 32 ............................T TTTTCGGTTCAGGATTTGTGGGAGAAGATGGG 108267 29 100.0 32 ............................. TTCAGCGGCAATCTCCGCGATATCGGTCTGGA 108206 29 96.6 33 ............................A CGAAGTGACGATAGACAGGATGGCCGCCGTGGT 108144 29 96.6 32 ............................T AACAGCAGCCCATATCAACCTAAGCGGCCCCA 108083 29 96.6 32 ............................G TAACCTGGCCTCCGCCCACGGAGGCACTCCTC 108022 29 96.6 32 ............................G TATTCTCGCCTGAACTCTTATGTTATCCAGTC 107961 29 96.6 32 ............................G TATCTCCGGAGATCACATCGCGTGCAGCCTCC 107900 29 96.6 32 ............................T GGGCCATCGCCGCTAAATATCGGCGACATTGT 107839 29 96.6 32 ............................G TATCCTCCGCGAATTTCTTACGCGCAGCCCTA 107778 29 96.6 32 ............................T CGGCGCTTGCCGCTCGGCTCAGCGACGTTACC 107717 29 96.6 33 ............................T CTGTTGACGTGCGGGAGTCGCGGATAGGTTTTA 107655 29 96.6 32 ............................T ATTAGGCCCCAAGTCGCCCGAAGACTCCGAGG 107594 29 96.6 32 ............................T TTTTTGGGGTATGACGCGGCCATTAGTAGCCT 107533 29 100.0 32 ............................. TTCAGCGGCAATCTGCGCGATATCGGTCTGGA 107472 29 96.6 33 ............................G CATCCTCCGACATTCCGGGTGCACCATTAATTA 107410 29 100.0 32 ............................. ACCGCCAACAACAAGCGGGACAACAGTACGAA 107349 29 96.6 32 ............................A ACGTACACCCGCGCGCCACCAAAGCCGTTCCA 107288 29 96.6 32 ............................G CGTTCGATGCCGTATTTGCGTGGGTCGTGTGC 107227 29 96.6 32 ............................T TGTCTCCCGTTAAGGACGTGGTTCCCGTGAAT 107166 29 100.0 32 ............................. GCAATTGATGCGCGAGTAGCCGCGATGGAGAC 107105 29 96.6 32 ............................G TACCAAATCGATGTAAAAACGACCTCGGGAAG 107044 29 96.6 32 ............................T GGTTTCCGCGCCCGACAGCCCTACGTTGATGT 106983 29 96.6 32 ............................G TCTATCTAAAGCGTCTTTTCTTATGTTCAATA 106922 29 96.6 33 ............................G CATTCTGCATATCCACATTAGCCTGATCACTTA 106860 29 96.6 33 ............................G ATCAGCCCGCACCCTATCCGCGACCTTATTCTC 106798 29 96.6 33 ............................G GAGCTTCTCCTACCCGGGGTCGCGGAAGCCCTC 106736 29 100.0 32 ............................. CGTCGGCCATGGTACCCCTGACTCGTCGGCAT 106675 29 96.6 32 ............................T GCGATTAATGCGCAATCCAGGAAAACCCATTG 106614 29 96.6 33 ............................A GTGATTCGCAAATCCGGGCGACCAATAAAATAC 106552 29 100.0 33 ............................. GTCACCCTCTGCGGCATAAAGCGCTTCACCCCA 106490 29 100.0 32 ............................. AGGGCGAGCGGTATTTATGCCTTAGCTTCTGT 106429 29 96.6 33 ............................T TGTCAGTCATATTGACTCCATTTTCTTTTCTGG 106367 29 93.1 32 ..........................T.A ACAAACTCAATACCTTCGCGTTTAGCCGCGTT 106306 29 96.6 33 ............................G CGTTATCCCGTCCATGCCGGGCTTTCGCACTAA 106244 29 100.0 32 ............................. ATCGCCGGAAACGTGGCCCTCGCCGGAAAGAT 106183 29 96.6 33 ............................T AGGACATATGATCCGCCCAGGTACCAGTAATGC 106121 29 96.6 32 ............................T GAGGATGCCTCTGGCCTTGTATGACAGCCTGC 106060 29 96.6 33 ............................T ACGGAGACAACGCCATCTAGATCAGTCATGAGA 105998 29 96.6 32 ............................A GTGACTGAAGTTGTACCCAAAATCGTGGACAG 105937 29 96.6 32 ............................G AATCGGCAGTTTAGCATACTGAGTTGTACCGC 105876 29 96.6 34 ............................T TCCCGCTTCGATAAGTTGGGGAAGTAGTGTGACG 105813 29 96.6 32 ............................G GCTCTTCTTTCGATTCTTAACCGTTAGTGTGT 105752 29 96.6 32 ............................T TCACTGCTGCCCCTGTAGCCAAAAAGGCCAGG 105691 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ==================================== ================== 145 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : ACGCCGCCGGATATCTCGCACTAGTTCACGCGCACGGTAAGCGCTTGTGAGTTGCCCTCCCCACGCCCTCTGATTTCAGCGGCATATCACTGCTGCTCATACGTAACCGACTGTCACTCATGACCATCCAGCCCAGCGTCAGTCAAGGGAGAACTCGGGTCGTCCCCTCGGCGGGCACAAATACATCGGTAGGTCGATGCTCCGCCTCACTCAACCAACCACAGCAGACGCGGAGAAAGGAGCCTTCATGACCTACTCAACCCAGACAAAGCTCGGATACATTGCGGCCAGCATCGTCCTCGGAATCCCCATCGCCTTCCTCGCCGTTTTAGTGACAAGCAACATTGCACTGGTTTACCACTGGCCCTCCCCGCTCTGGATCGGTGCTCACGCAGCCGCTTGTACTGCCGTTGCGGGAGGGGTGTACTGTCTGCACAAAGCTGCCACGTCGGTTGCTGCACGCCGACAGTCCGAGAAGTTACCCTGGGCGACCTACACAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //