Array 1 1193-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLQ01000035.1 Legionella pneumophila strain NY14 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1192 37 100.0 34 ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 1121 37 100.0 34 ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 1050 37 100.0 36 ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 977 37 100.0 34 ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 906 37 100.0 35 ..................................... CAATAACAAGCGAGCCTTTTGTACTAGAAGGTTTA 834 37 100.0 34 ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 763 37 100.0 34 ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 692 37 100.0 34 ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 621 37 100.0 35 ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 549 37 100.0 34 ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 478 37 100.0 34 ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 407 37 100.0 35 ..................................... CTCACATCTTACCCTCAGGGCGGATATTGTGAATC 335 37 100.0 33 ..................................... ATTAATAATATTTTAGAAGATTGGCACATAATA 265 37 100.0 34 ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 194 37 100.0 31 ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 126 37 100.0 36 ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 53 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 100.0 34 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCC # Right flank : CCTATTGCAAGCTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 504-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLQ01000090.1 Legionella pneumophila strain NY14 contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 503 37 100.0 36 ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 430 37 100.0 36 ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 357 37 100.0 37 ..................................... TAAGATATTGGTCGATTGTTTGCAAGACGTCATCAAA 283 37 100.0 34 ..................................... CTAAATCAGCAGTCATCAAAACCCATATGATTGT 212 37 100.0 33 ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 142 37 97.3 34 T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 71 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.6 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : ACATTTTACCTTTTAACACATATTGATAGGCG # Right flank : CCATAATTGGGAATTGGAGTGAAATGCTCACCGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //