Array 1 757220-756400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040840.1 Leptospira weilii strain CUDO6 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 757219 29 100.0 32 ............................. TTAGCTACAAACAATATATTGGAATAATCTGA 757158 29 100.0 32 ............................. GTTCCTTGAATGAAAGATTTCCTATTTATGAA 757097 29 100.0 32 ............................. GAGGATTGAATATGAAACTAAGTTATCTTACA 757036 29 100.0 32 ............................. GTGTAAAATTCAATCGAAATAGGGACAACAGA 756975 29 100.0 32 ............................. AAATTGATCGAGTGTAATATCAAGTTGCGGCT 756914 29 100.0 31 ............................. GCATCGTGGTGTGTCCGCTACGCATAAAGGC 756854 29 100.0 32 ............................. GAAATAAAATCATTCAAATACCAACTTCAGAA 756793 29 100.0 32 ............................. AGAGACATCTTCAAGAATATCCATTATCCAAA 756732 29 100.0 32 ............................. TGGGTTAATTTTAATGTTCCTAACCTGATAAC 756671 29 100.0 32 ............................. TTCTCATCAAAAGCGTCCTCGCCGGTGTAGAT 756610 29 100.0 32 ............................. TTTGGAGTTGATTCTTATGTGATGCAACAGGT 756549 29 100.0 32 ............................. TTCTCATCAAAAGCGTCCTCGCCGGTGTAGAT 756488 29 100.0 32 ............................. GAGTTTGTTTTGATGTCACAGGTTTACAAAAG 756427 28 89.7 0 ....................-.....T.A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1120427-1119181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040840.1 Leptospira weilii strain CUDO6 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1120426 29 100.0 32 ............................. AACGATTTACAATTGCTTTATCGATACCGCAA 1120365 29 100.0 32 ............................. TTTAGCGGCATCTTCTAAAGTCAATCCCGCAT 1120304 29 100.0 31 ............................. GTATATGAACCATTCTTTCATTTGGAATAGA 1120244 29 100.0 32 ............................. AGAACAGGTGGCATTCGTGCTGATCTACGCTA 1120183 29 100.0 32 ............................. GGAGAAAGTGCGTTCAATCGCATTGGGAGAAG 1120122 29 100.0 31 ............................. CGCACCGGCCTCGATCCGTTCAATCGTCAAA 1120062 29 100.0 32 ............................. ATACAGCGATTACATTCGGATTCAGTATTTTT 1120001 29 100.0 32 ............................. GAATTATTACATTGCTTCCTAAAGATTTTGAA 1119940 29 100.0 32 ............................. ACATCATTTGAGCTGCCTTACGATAATCCGCA 1119879 29 100.0 32 ............................. AAAGTTTCGATATGTTTGTCGAACCCTTCGGC 1119818 29 100.0 32 ............................. CGCAGGCTTCTTACTGGAAAGCTGAAGAGATA 1119757 29 100.0 32 ............................. ATAATTATCAAAAATAATTATTACATGGTTTT 1119696 29 100.0 31 ............................. GAAGAACAGCTGAATTAAAAAATGTGAATAC 1119636 29 100.0 33 ............................. GAGATGGCATTATTAAAGTTCAAACTCCTCAAC 1119574 29 100.0 32 ............................. AATGAGGCAAACTATTATTTTGTTTAAAAAAT 1119513 29 100.0 32 ............................. TTTCATCTCCCATATTTGATTTGTGAGTTAAA 1119452 29 100.0 32 ............................. GGACATTCCGCCAAATAAACAGATTAGATATT 1119391 29 100.0 32 ............................. TTATGAGAGAGTGATTTTATTTTCTCAAATTT 1119330 29 100.0 32 ............................. GAGTCTGAGTAGTCTATTTTCATACGGACTAA 1119269 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 1119209 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //