Array 1 218991-221899 **** Predicted by CRISPRDetect 2.4 *** >NC_016043.1 Taylorella asinigenitalis MCE3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 218991 29 96.6 31 ............................A ATCAGCTCCCTATTTCTATCAGTTATTTGTG 219051 29 100.0 31 ............................. AATAATTTTGGTGATATCGAAGTGTTAGATG 219111 29 96.6 31 ............................A ATTCGTCCCAACTATTCGAATTTAACGGTTC 219171 29 96.6 31 ............................A TAATTTACGCAGACACTTATTTCCTATCATC 219231 29 100.0 31 ............................. AAAAGAATTAAGTATTGGTGATAATAATTTT 219291 29 100.0 31 ............................. CGACGAATTGTTGGTAGACGATTGCAATTAC 219351 29 100.0 31 ............................. CGTGAAAACCATCTTCTGAAGTGATTCCACG 219411 29 100.0 31 ............................. AATAGATAGATATCATCAACAGATACAGCTG 219471 29 100.0 31 ............................. CAAGCAATATCGGGTCTAAACCATTACCTGA 219531 29 100.0 31 ............................. CAATAAGACTTTAATTATTCTTCTTCGTACG 219591 29 96.6 31 ............................A ATTGTTTCTTTATCTGTGTAATTCATTTCTT 219651 29 100.0 31 ............................. AATAATTTTGGTGATATCGAAGTGTTAGATG 219711 29 96.6 31 ............................G TACAAATCTAGCATCAGGCATTAGTCCAATT 219771 29 100.0 31 ............................. TATTTAGCGTTTTTACAATCCAGCTAGTTAG 219831 29 96.6 31 ............................A TGATTTACTCCTTTAGTTAATTTAACAGCTT 219891 29 96.6 31 ............................C AAAAACTCTAATGCTTCTTTTAATTCTTGAT 219951 29 100.0 31 ............................. CTGTAAAGTTTATTTAAGTCGATATTGAAAG 220011 29 96.6 31 ............................A ATTGATATATGAACTTCTTTCAGAAGAAGAG 220071 29 96.6 31 ............................G TCTAGTTCAACATCTAAATAAATAAAATAAT 220131 29 100.0 31 ............................. GACTGGCTATGAAAGAAATTTTTAATTCTAA 220191 29 96.6 31 ............................G ATTAATATTATCAATATGATTATCTATATAA 220251 29 96.6 31 ............................A TCAACAAACATATAAGAGCCAATCAGTTCCC 220311 29 100.0 31 ............................. TTTTTTAACAAGGGAGTAAAAAAAATAATAT 220371 29 96.6 31 ............................C CGAATTGGAGCTATCGGTCTAGCTCCCGATG 220431 29 100.0 31 ............................. AATAATTCTGCTTTTAATTGATTGAGATTTT 220491 29 100.0 31 ............................. CTTCATCTCAATAAACATACCGCAAAACGGT 220551 29 100.0 31 ............................. AACAATAGATGAGCTCCCAAAATTTTTTGAA 220611 29 96.6 31 ............................A CCACGGAGCGTTTTGTGCAGTGAGTGTTTTG 220671 29 100.0 31 ............................. TATTGTAGGTTATGTAAAAAAGAATTAGCTA 220731 29 100.0 31 ............................. TTGACATCCTCAACAATCTGCTCGCCTCGAT 220791 29 96.6 31 ............................A CTGCGGAAGCGGTGCTATAGAATCTAAACCA 220851 29 100.0 31 ............................. GCAAATACAACTTGTCGTGGCTGATCTTCCA 220911 29 100.0 31 ............................. GAAGATGGTGGTTCTTACTTGTTCTACGGTT 220971 29 96.6 31 ............................A TCACTTAGAACAGTAACAGGGTGTCTTAAAC 221031 29 100.0 31 ............................. ATACAGCAGCGGCAGTCGGTGCCCAACGTAA 221091 29 96.6 31 ............................A CAATTATGTAGGCATACTGGTTGTAATAAGC 221151 29 96.6 31 ............................A GACATAGTTGATACCAGTCATCGATTTGATT 221211 29 100.0 31 ............................. TTGAAATTAAATTCAAAGTCAGGTTTTATAA 221271 29 96.6 31 ............................C AATATTCAAACCATACGTCGATTTCCCCAAA 221331 29 100.0 31 ............................. TGAGAACGGCATAAACGGGCGTCGGGCAATA 221391 29 100.0 31 ............................. TTCATCAGCTTCACATATTTTTAAGTGATTA 221451 29 100.0 31 ............................. GCCTGTGTAATTGCAATCGTCTACCAACAAT 221511 29 96.6 31 ............................A GAACTTTTAGTGATTGACGAAATAGGAATTA 221571 29 96.6 31 ............................A TAACCAACAGATAGCTTGATTTCCTTATATT 221631 29 100.0 31 ............................. TAAAAGGGTATATCTTCGTGAAGATTTTCGG 221691 29 96.6 31 ............................A AGAGCAGGTCGAACTTTTTTTATGGGCAAAT 221751 29 100.0 31 ............................. TGGACTTCGTGTAGATCCAGTACTACCAATG 221811 29 100.0 31 ............................. CTTGGAATTGGTCGTTGTATTCAACGCCTAA 221871 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 49 29 98.5 31 GTTAACTACCGCATAGGTAGTTTAGAAAT # Left flank : ATGTCATCTGATTTAATTATAGATGAGGTTGATGATTTCGATACTAGAGATCTCGTTGCTATAGGTAGATTGGTACATTTAGCAGGGATGTATGGAAGAAAGGTGATGATATCTTCAGCAACTATACCTCCTAGTTTGGCTAGAGGATATTTTGAAATGTACAAATCGGGTTGGGAGATATACAAAAATTTTAAAGATATCAAATGTGAAACCCTAAATGTAGTGTGGGTGGATGAGTTTGATACCAAGGTAGAAAATATTAGTCTGAAAGAACCAAAGTTTGAATCTAACCACAAAGATTTTGTTAATAATAGATTAGAGAAACTTAAGAAAAAGCCTGTATTACAAAAAGCTGAATTGATAAAGTGCAATCATTTGATAAATGAAGAAAATAAACTAGAAAAATATTTTCAATTAATTTTGGAGAATATTAAATCTTTTCACGAAAATCATAACAGTAAGTTTGAAATATATGGGGCTACTGAGATATTTTTTGTATT # Right flank : TCTTAATTAGTTTATCACCCCCTACAAACATTTAAAATCAGTAAAGCCACGTATACAAGGTGCAATACAATCCCAAGGCACGATACCCACCCAAACTCTTTCATTAATCCACCCTTCAGTTACAATATCTCACAAATTAATTCAAACAAAAATAAAAAAAACAGGAGCTACATCTTGATATCAGCATTGATCATAGCCGCTATTGTCGTTTCCATAGCTATAGGTTATATCTTCAAAATAAATATAGGTCTTCTTGCAATATCATTTGCTTACATAATTGGTACATTCATACTTGATTTAAAACCTTCTCAAATCGTAGCACTGTGGCCCTTGAAATTATTTTTCGTAATTATGGCTGTATCGCTTTTTTATAATTTTGCGACAGTAAATGGCACACTAGAAAAGCTAGCAGATAACTTGATATACAGGTCCAAGAATTATCCTTATCTTCTGACATTCGCCGTGTTTGTAGCCTCTACTCTAATAGCTGCTATGGGTGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGCATAGGTAGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //