Array 1 860419-859547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034211.1 Pectobacterium carotovorum subsp. carotovorum strain 67 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 860418 28 100.0 33 ............................ CAACTTACGGCCACTCTGTTTCTAAGCTGCCTA 860357 28 100.0 32 ............................ GGACACCTTCGCATTGCCGGACACCCGCGCAT 860297 28 100.0 32 ............................ AGCGGAAGTGCAAATGGTCTATTCGCAGGTTG 860237 28 100.0 33 ............................ GAGTATTTTAACGCCCGTAGGAGGGTATATGTC 860176 28 100.0 32 ............................ GACGTGAATACGCTGGAGCAGCTGGAGACGGC 860116 28 100.0 33 ............................ ACGGCCTACCAGCATCAGCTAGCAGCGCCTCAA 860055 28 100.0 32 ............................ CGAAACAGCACTGAACGCAGCAAGCGGGGCAA 859995 28 100.0 32 ............................ GAGCGCTGCTTCACTTCCAGTTTGCCGATGCC 859935 28 100.0 32 ............................ TGCAAAGCGGGAATATTGTTGGTTACAGGTTT 859875 28 100.0 32 ............................ GACCGCTCCCGTTCGTCCGCGCCTTTGGTGGG 859815 28 100.0 33 ............................ ATCGAAGTGATGAACTATACCCCAGCGGACTAC 859754 28 100.0 32 ............................ CGGCATGGATGATGCTACCGGCACCCGACTTA 859694 28 100.0 32 ............................ AGCTTGATTACGACACCACGGCGCTGATGAGT 859634 28 100.0 33 ............................ GAGTAATTCAGATAAATACATGTTAATCATGGT 859573 27 82.1 0 ...A.........C........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAAAGCCATCCCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGTAGCGCCGAACGGTTACGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : CTTATCAGAATGCGTCGCTGACGCGATGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGTGCCGGCATGTCGTCACTCCCCTCATAAGTATGACGGTAATATGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTAATCGTTAGCGCCGCCGAGGTGTGCTTGATAAATACCTGCATCAACCCGACGTTTATCTGGCACAGTGCAGTAACCTGCGCCAATATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTTGGCTTCAGGCGGATTTCATACTGTGTCCACATCGTCGGCTTCCCTTTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 868987-870516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034211.1 Pectobacterium carotovorum subsp. carotovorum strain 67 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 868987 28 100.0 32 ............................ CTGAAATACATGCGCATCTGATCTATGCCAGA 869047 28 100.0 32 ............................ CAGAGTGGCCGTAAGTTGGTAATGTGGTTTAG 869107 28 100.0 32 ............................ ACATCACTCTGCAAGTTATACGTGCTACCAAC 869167 28 100.0 32 ............................ CCGACTGGCAGCAAATACGGCGTCAGCGCTGT 869227 28 100.0 32 ............................ AATAACTCGTTATCGCATCAGTCAGGGCGATC 869287 28 100.0 32 ............................ ATACTGAGACACAAGACGGCTAGTCTGTACTC 869347 28 100.0 33 ............................ GTTTACCGGGATAGGCCGCGCCCATGCGAACAA 869408 28 100.0 32 ............................ AGGTAATACCGGCTGTTACAAAATTGATGGGT 869468 28 100.0 32 ............................ AGTCCATTGATGATGGGCTGAAATGCCAGCCC 869528 28 100.0 32 ............................ AGTGGCCGTAATTGTACCTGTTGCCGTCGTGG 869588 28 100.0 32 ............................ GGGAGCGTGCTGCGCGTGGCGCTGGCCCCGTT 869648 28 100.0 32 ............................ CACACGCCCGGATATTCAGCGTCTTTAAAATC 869708 28 100.0 32 ............................ ACGATAGCGATACCATGCCCCTTGATAGTTAA 869768 28 100.0 32 ............................ AGGCACGGTTGATTTAAGCGAAGAAACGCAAA 869828 28 100.0 32 ............................ GGCTACTGGTCTGAGAAGTTCGTATCTGGCTC 869888 28 100.0 32 ............................ TGGCAGCTTCTGCGTTCTCTGCAATGACAGCA 869948 28 100.0 32 ............................ CGCCATCGCCGCACAGCGCTTCCTGTGAATCC 870008 28 100.0 32 ............................ GGAATAACAGTGAAGGAGGGGTGATGGAAGGA 870068 28 96.4 32 ...........T................ GATGAACGCCCAACCCGTGGCCGCCCCTCAAA 870128 28 96.4 32 ...........T................ CGCGCGTTCGTTTGCGTATCAATGAACCGGAA 870188 28 96.4 32 ...........T................ CAGAACCAGCGATTAATGAGGAGTGTTTCTGT 870248 28 96.4 33 ...........T................ TGACGGATTAGTCGTTGCAGCCGTAAATAACAG 870309 28 92.9 32 ...........T.A.............. GGCTTCAAGTGCCTGGAGACGATAGGTCGCGT 870369 28 96.4 32 ...........T................ GATGGCCGTCTACCGGACTGGCGCGGTCGGGT 870429 28 96.4 32 ...........T................ GCGGGGCTTTGTAATCGCCATGACGATGTATT 870489 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGATACCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAGAAATATAATCCTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACAGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGAGCGGGCTACA # Right flank : AGTTATCCCACTGCGATTTAACTGCCGCACAGGCAGTTCATCCACGACCTTAAGCGCTGCTGTCTGGCTATTATCGAGGTCGCGCTGCGCCAAGTACTGAATACGTTTAACCCTTAAATAACACATGTTGATGCCCTTCTTCCGTAACGTTTTTAATTAATGTGTTACTTTTCGGGGAATGAAAAATTGCGTATTAAGCGTTATTCACATTTAAAAACCATAATTTTTCCGTTAAAGTGCTCTTACAGGGAAATAGCACGTTGACTTAAGTCAAACTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATCAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 878842-878334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034211.1 Pectobacterium carotovorum subsp. carotovorum strain 67 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 878841 28 100.0 32 ............................ ATTATGAATGCTCTTGGTTCAGGTTTCGCGAT 878781 28 100.0 32 ............................ GCGTCAAGTAAGCGAATGCTGGTACTGAAGAT 878721 28 100.0 32 ............................ ACCGAAACACATCATGATACCGTGGAAGACGT 878661 28 100.0 32 ............................ CGGATAGTTCAGGCGTAACCAAACGCCATTAT 878601 28 96.4 32 .........C.................. CTGTCGGTTTTGCGTGGTTTTCACCGGATTGT 878541 28 96.4 32 .........C.................. AAATAGGGAAAGTTGTTGGTCACAAACCAGTG 878481 28 92.9 32 .........C.G................ ATCATCCTCGCCCTCGGCCGATACGGCATCAC 878421 28 89.3 32 .....T...C..G............... GGACTGAACAACGCTAAACTAAAAACGTGCTC 878361 28 82.1 0 .........C.A.C......T.G..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 95.2 32 GTTCACTGCTGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAATCAGCGTCAGCACGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGGCCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAATCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATATAGAAATTCAGTCAGCCACTTACATTTTATTATTGCTGGCTAAAACATGAGCTAAGTATAGATATTAATCATTCATCTGTATATCTATAGCATATGCATATACCTGACATAGGTCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGAATCTTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTGACTACCGTAACATATGAACG # Right flank : ATAAAACGCCGCAAAAATCAGGAATAAAAAACTCATAGGCAACACAGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGCTTAGGAAACGCGATGTACACCATTGATGATTTCGATCTGAAAATCCTGACGCTACTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCACAGTGTTCCCGGCGTCGTATTGCGCTGGAACAGGCACAGTTAATTCTCGGCTATCATGCTCGCCTGTCACCGAACGCGGTCGGGCTGGAATGCCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGTGAATATGTTGAACGCTTTCATCAGATGCTGGGAGAAGTGGACGCCATCATTGACGCCTATAAAACCACGGGCGATGCGGATTATCTATTGAAAGTCGCCGTAGCGGATCTGCCCGGTCTCAGCGCGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //