Array 1 9487-10443 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000025.1 Clostridioides difficile strain LIBA5809 .11940_2_74.25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9487 29 100.0 37 ............................. ACTGCTGACTCAGGGAGTGTAAAAGACTTGGTTATAA 9553 29 100.0 36 ............................. TATTTTTATGTGCTTAAAGAAACTCATTTAATTAAA 9618 29 100.0 37 ............................. GATTTAAAAGGCTTTTCGTGCATTGGAGGATTAGATT 9684 29 100.0 37 ............................. TTTTTAATAGCTAATTTAATATTTCTATTTAAAGTAT 9750 29 100.0 38 ............................. TTTCAGTAGACAAGAGTTTACTAATATGTTAGAAGAAC 9817 29 100.0 37 ............................. ATCTTCTCACATGCTCTACCCCCTACAACATATAAAT 9883 29 100.0 38 ............................. CGCTTTCAGTATCACACCAAGTAGCAAATTCTTCGTAA 9950 29 100.0 37 ............................. ACTAGAAATTGTACTTTTTACAACTCCTTCTAAATTT 10016 29 100.0 36 ............................. TTTATTTTCTTGTTGATTTATTCTTTCTGTTGTCTC 10081 29 100.0 37 ............................. TTTTTCAAAAATGTTTTTGTATCTTGAAAATCATTAC 10147 29 100.0 38 ............................. GTTTTTATCAGAAAGAGTTGAACGAGGATTATATATAA 10214 29 100.0 38 ............................. GGAGTACCAGAATAAAAATATATCACAGAAAAAACCTC 10281 29 100.0 38 ............................. CTTATGGGACTTAGATGTACAAGCAAATCTAACACAGT 10348 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 10415 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.8 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAAACATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGTAATACAAAAGTTTTTATTTAAACTATGCTTATTCAGATAGGTATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGCGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATGTGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAATTTATATTATATTATAAAAACAAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTCTGTCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACCCTAATTTATCTAAAGATTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57785-57425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000028.1 Clostridioides difficile strain LIBA5809 .11940_2_74.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 57784 29 100.0 38 ............................. ATTTTAATATCTCTTATTGATGTTTTTGTTTTAGGTGA 57717 29 100.0 38 ............................. TTCAAAGAGGTGATTTGAATGTTACAACAGTACCAAAA 57650 29 100.0 37 ............................. CTTAAAAACTATAACGAATGTAATTACTCTTATTCTA 57584 29 100.0 37 ............................. TTACATCATCAATAATCGCTCTTATATCTCTACTATC 57518 29 100.0 36 ............................. TAATATACCTGCCTTTATAGGTAGTTTTGCATCTTT 57453 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAAAAGAACTAATAAAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTGATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGGTTGAGGGTGTATGATAAATATTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGTAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATGATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGTCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8013-7652 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000004.1 Clostridioides difficile strain LIBA5809 .11940_2_74.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 8012 29 100.0 37 ............................. GTAAAACAAGGCTCTCGTTTACTTAATTTCATATTAA 7946 29 100.0 39 ............................. ACGTAAAAATATGTATCACCACGATACACTGTATATAAC 7878 29 96.6 36 .....G....................... AATGAAAATGATGTCTATATAGACCAATTAAGCTGG 7813 29 100.0 38 ............................. CAATATATCTCTCAATAAAGAGTCCCATCCAGATATTA 7746 29 93.1 37 ................T...........T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGGA 7680 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 93.1 38 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGTTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24553-26163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000042.1 Clostridioides difficile strain LIBA5809 .11940_2_74.42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 24553 29 100.0 37 ............................. GTAATTTTATCCCTATATATCTTATCAAACTTAATTC 24619 29 100.0 36 ............................. AAAAGCAAAGCTGTTGGCAAAATGACAGCTAAGCAT 24684 29 100.0 37 ............................. CCAACTAAAGTGCTTGAGCCGCTTATGGAAGTTGTAA 24750 29 100.0 37 ............................. TTATTATTACTTACATCATTAGTTAATTTTGTTTTAC 24816 29 100.0 36 ............................. TTCACTTCTTTCTTCAATTGTATCTTTTGGGGTAAA 24881 29 100.0 37 ............................. TTTAAACGAAACACTTGAAATAGTTGACGTAGTAGCT 24947 29 100.0 37 ............................. CCTTATCGAAATAGCTTCTATCAACATCCCAGAGCTG 25013 29 100.0 38 ............................. AAAGGCAAGTTAATAGCTGGTATGGCAAAAGATTATTT 25080 29 100.0 37 ............................. ATTAATTTTGTATATGAGTCTTTTACTTTTACACCTC 25146 29 100.0 37 ............................. ATGCCTTGCAATCCTTCCGAGAATGACGCATATTTGA 25212 29 100.0 37 ............................. TATTCATATTCATTTTTATCATAAGGTACTTTCAATA 25278 29 100.0 37 ............................. TTTTTAAAATTCTGTGTGAAAGAAGTAAAGTAGACTA 25344 29 100.0 36 ............................. CTGTATCTGTGACAACAAACCAATATGGTTTGTATC 25409 29 100.0 38 ............................. TTCAATTCCCTGCTGGTCTGTATATTTTAGTCTTGTCA 25476 29 100.0 37 ............................. ACGAAATTAGAGTTTGAAATATATGACTACATAATAG 25542 29 100.0 37 ............................. GGGGACATCTTTTTTATTGTTTATGTTTTTTTATCCA 25608 29 100.0 37 ............................. ACAATAACATCCATTAATGGGTCAATTGTTTCAGTTT 25674 29 100.0 39 ............................. TAAAACCATCATACTTACTCATTAAAGGCTCTTTTTCTT 25742 29 100.0 36 ............................. AGTGCAACCTCTTGCCCTTTCGAATTTCTACATATT 25807 29 100.0 37 ............................. TACTACAATTTAGCCAACACAGGGAAGAAACTTGCTA 25873 29 100.0 37 ............................. TGATAGCCAACGCGATAGGAGCAACTGCAGAGATTGC 25939 29 100.0 38 ............................. TTTTCCCAATTTTGAATACTTGTATAATGTACATTCAG 26006 29 86.2 36 ......................GA...GT AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 26071 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 26135 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATATATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGAATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : TAAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30481-30769 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000006.1 Clostridioides difficile strain LIBA5809 .11940_2_74.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 30481 29 100.0 36 ............................. TAATCCAGAGTTAAATAATTCATCTACATTATCAAC 30546 29 100.0 37 ............................. AACTATAAAAGCGGTGGTGAAGCTTTAAAGTTTTATC 30612 29 100.0 34 ............................. TGGTTCTATTAAAAAACTTTTTGCATATAGCAGG 30675 29 100.0 37 ............................. TTAAGATTTCATTTAGCTCATTCTCAAAAATAATTTT 30741 29 93.1 0 .........T..................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTATCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAAAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGCATTGAGAATATGTGATAAGTATTATCAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGGGGTATTAGGCTGGACCAATGAAGGCTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATACTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 91815-92091 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCK01000016.1 Clostridioides difficile strain LIBA5809 .11940_2_74.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 91815 29 100.0 37 ............................. GTAATAAGCTTCAAGATTTTTATTATTCAGATGATGA 91881 29 100.0 20 ............................. ACTAAATTCAATGCTATCAC 91930 29 100.0 37 ............................. AAATTAGAGTCAGCTTTACATAAAGCTTTTGATAATA 91996 29 93.1 36 .................C..........T CATGATATAATTTTGAAGTTATCAGATTTTTTCAAT 92061 29 89.7 0 ...............T.......T....A | GA [92082] ========== ====== ====== ====== ============================= ===================================== ================== 5 29 96.6 33 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGTATTGTATCAGCTTTCATATATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTGGTATAGATATTCAAAAATAATATTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGCTACAAAGTAAGGCTTAACGCTTGAAATATAAGGTGTTGAGGGGGTATGATAAGTGTTATCATTTGCACTACTCATGCTTCACTGCAATTTTAATAGTATTGTATATGTGTAAACATTGGAAATACTCAATTTATTTTGGG # Right flank : AGTTGCAATGAGTAGAATAAGATTTCTATTTATAGCAACTTTTTTTACATAAATATATAAATAAAATATATTATAAAAAATATTATAAAAACAAGAAAATACAAAAAATTATAATTAAAAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.26, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //