Array 1 27-1410 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQB01000023.1 Bifidobacterium longum strain 1898B Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 27 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 91 35 97.2 28 ...............-.................... CGTATTCATCGTGGCCTCTTCGCGGTTT 154 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 218 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 282 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 346 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 410 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 475 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 539 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 603 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 668 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 732 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 796 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 860 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 925 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 990 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 1054 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 1119 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 1183 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 1247 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1311 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 1375 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 22 36 99.2 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TGTAATCGGTCATAATAGTTTTCAATC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 248078-248560 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQB01000022.1 Bifidobacterium longum strain 1898B Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 248078 36 100.0 28 .................................... CGTGGACGGTGACGGTCACGGACGACAA 248142 36 100.0 28 .................................... CAACCGACCAGATTGATGTCAGGCTCCG 248206 36 100.0 28 .................................... ATGAAGTCTCCATAGTCAGTCCATCCGA 248270 36 100.0 28 .................................... CAAGTGGAACTTGTGTACTCACTGCATA 248334 36 100.0 28 .................................... ATTGTAGCCGGGTCACGTATGCATTTAG 248398 36 100.0 28 .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 248462 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 248526 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCATTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //