Array 1 903-152 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBO01000111.1 Acinetobacter baumannii strain TG15485 Acinetobacter-spp-TG15485_362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 902 30 96.7 30 .............................C AATATGCTAATCCACCTTCAGAATCTGCAC 842 30 96.7 30 ............................A. TATAAATCATCATTAATAGCCATATGTACG 782 30 93.3 30 ............................AT CATAGCAGCCCCTAAAAGCTCAGGCGTTAA 722 30 93.3 30 ............................CT GGAAGAAGCTAAATGCTATTTTTCAGTAAC 662 30 93.3 30 ............................CT TAAGTAATTTTGAGACGGCACTAGATAGAA 602 30 100.0 30 .............................. CGTGTTGCATTATCAAGTATGCAAGTTGGG 542 30 93.3 30 ............................AT ATGTAAATAAAGAAAGTCCAGCACCCTTAA 482 30 93.3 30 ............................AC CACCAGTCGGATTTCCCTGTGGGTCTTTAA 422 30 100.0 31 .............................. TGCAAATCAATTTAAATAAATTTTAAGTCAT 361 30 100.0 30 .............................. GAAGATTTCGGGCTTTTTCAATAACACCAG 301 30 93.3 30 ............................GG TAGCCCATCTATTAAACTCAACCCGAAACA 241 30 93.3 30 ............................CG CAAAACAGAATTTACTTTGACACTAAAGAT 181 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 13 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GACAAGTTAGAAAATGAGAAGCCTTTATAGTCAAATCATTATAAAACCAATACAATGGTGCAATGAGTTATTCAGAACATTTTAGACGTAAAATTTTAGCTAAGCTTGAGGAAGGTTATTCTATTCGAGCAGTAGCTGCACAATTTGAAATT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147-595 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBO01000101.1 Acinetobacter baumannii strain TG15485 Acinetobacter-spp-TG15485_352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [152] 208 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 268 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 328 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 388 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 448 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 508 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 568 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAAT # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 154-2823 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBO01000130.1 Acinetobacter baumannii strain TG15485 Acinetobacter-spp-TG15485_381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 214 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 274 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 334 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 394 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 454 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 514 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 574 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 634 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 694 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 754 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 814 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 874 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 934 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 994 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 1054 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 1114 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1174 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1234 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1294 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1354 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1414 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1474 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1534 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1594 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1654 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1714 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1774 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1834 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1894 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1954 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 2014 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 2074 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 2134 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2194 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2254 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2314 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2374 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 2434 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2494 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2554 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2614 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2674 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2735 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2795 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 45 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-5567 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBO01000033.1 Acinetobacter baumannii strain TG15485 Acinetobacter-spp-TG15485_284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 132 30 93.3 30 ............................CC TGCTCTAGCCTTCAGATCGCATAATGCCGA 192 30 93.3 30 ............................TA TAAAAAAACGTGGCTGCGGTGCGTACGGTA 252 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 312 30 96.7 30 .............................A CTAATCGGCAATCCTCTGTCAGCTTGATAA 372 30 93.3 30 ............................TA AATACAATGGAACAGAGACTGTTAAGAATG 432 30 100.0 30 .............................. TCATTGGTGGTGAGGATGAGGACCAATGGA 492 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 553 30 93.3 31 ............................TA TTTAAACCATTGCGTTAAAAACAATTCATAT 614 30 93.3 30 ............................TG CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 674 30 96.7 30 .............................C TAATTCAACAGGTACGGCATACGTTAATCC 734 30 93.3 30 ............................TG ATGATGTTTGTTGGATTGCAACTGATGAAG 794 30 93.3 30 ............................TA GTGAAGAAGTATCAAACATTGTTCAAGTAA 854 30 93.3 31 ............................TG TTAGAGCCACACAGCAAGCTACGCAGAATGT 915 30 96.7 30 ............................T. CTTCATCTTTAAATTTTCGCATTGCTGTGC 975 30 96.7 30 ............................T. TTAGATCGTATTCGTCGTGAAAAATTACCA 1035 30 96.7 30 ............................T. TCACAAATGAAGTTCGTGCAGTTGAAGAAC 1095 30 93.3 30 ............................TC ACCTGACCACTTGGCTGAATGGTGCTTTAT 1155 30 93.3 30 ............................TG ATCGGTTGCACCTGAAGGATATTTACCAAG 1215 30 100.0 30 .............................. CTGAAACTGAGCCTCAGTCTTAAATGGAAC 1275 30 93.3 30 ............................CA TGAAGATTACACCCACATGATCATTCATCC 1335 30 93.3 30 ............................CA AAAAATTAATAACTATTAACCCGCTTCCTC 1395 30 93.3 30 ............................TC GCAAAATTAGTGAGAACAAGACTGTTTATC 1455 30 96.7 30 ............................T. GGGGTGACATACCCGCTAGACCATTTTTAC 1515 30 93.3 30 ............................TA ACGTGGTCAAGCCGCCGAAGATTCCTGAGA 1575 30 93.3 30 ............................TC TTACCGTTCCATCTCTTCCAATTGAGAATA 1635 30 93.3 30 ............................GA ATAAACATGACCAGCATCATAGCCATCAAC 1695 30 93.3 30 ............................GG CTTTGCAAAACCTCTTTTACAACGAGCTTT 1755 30 93.3 30 ............................CA GACATTACAGCCGCCCCAGTTGCTTCCACC 1815 30 100.0 30 .............................. TAAGGGGCGATGCTTTATTGATCCAGCCAC 1875 30 96.7 30 .............................C CGAAATGGTACCAAGTCTGAAAACCGCATA 1935 30 96.7 30 .............................A TGACAACTGATCCACCGTTTTGCCAAGTTT 1995 30 93.3 30 ............................TG TCCCTGCTGCAATCATTTCAAGAATCTTTT 2055 30 93.3 30 ............................TC TGAGATGTACGCTAAACAATTCACGAATGC 2115 30 93.3 30 ............................TG AATTTTACAAACTAAAGCTGGACGGAAAAT 2175 30 100.0 30 .............................. CGATCTTAGCACCAAAATCGTAATATGTAG 2235 30 96.7 30 ............................T. GAGCTCTCTCACAACTAAGCGAATTTAAAT 2295 30 96.7 30 ............................T. CTGGAAAGCCTATTATGGATAGGATTATCG 2355 30 96.7 30 ............................T. GAGCACGTTCACAGCTAAGCGAATTTAAAT 2415 30 96.7 30 ............................T. GTGATTGGCGCGAATCTATTAACAAAGAAC 2475 30 93.3 30 ............................TC TTGAAGTCGAGTATAGTTTTTAATCTTATG 2535 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 2595 30 100.0 30 .............................. AGAGTTTTCGAGAGTTCGATTAAGCACATA 2655 30 100.0 30 .............................. GTGAACGGCCAAGCATAATAATCAGGCCAT 2715 30 93.3 30 ............................TG TAAGTAATGGCGCACATCTTTTTTAGCTGA 2775 30 96.7 30 .............................A AGCCTGAATTGATTGAATCGACGATCTGAT 2835 30 96.7 30 .............................A CCATACCAAGCTGCAAACACAACCGCACAG 2895 30 96.7 30 .............................C ACCAGTTACAACGTAATTACCATCCAAGAA 2955 30 96.7 30 .............................C AAAAAGCTAAGTCTTTGGATGGGTGATGTT 3015 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 3075 30 100.0 30 .............................. GAAGCTAAGAAATGGGAACACCTGCAAGAT 3135 30 96.7 30 .............................C GTAAAAGGACTTTACGGTTTGGGTCAGCTT 3195 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 3255 30 96.7 30 .............................A CAACACCAATACCTCTGTTAAAATTTTCTT 3315 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 3375 30 96.7 30 .............................A AACCATCCACAGGGTAACCATTAGCAATAC 3435 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 3495 30 96.7 30 ............................T. CTGTTAGCTCTGCTGGATCATCAACGCCAT 3555 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 3615 30 100.0 30 .............................. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 3675 30 96.7 30 ............................T. TTGCAATCATGATCCGGACGATAAAAAAAT 3735 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 3795 30 100.0 30 .............................. GACGAACCTGTCTTACCTTCAGATCCTTCT 3855 30 100.0 30 .............................. ACACTCATCGCGATTCTATTAAAGTCTGTT 3915 30 96.7 30 ............................T. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 3975 30 96.7 30 .............................A AATGAGAAATTCATAACCATATACCCCGAG 4035 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 4095 30 93.3 30 ............................TA TGAGAAAGAAAAAAATTGCGACAAAGATAA 4155 30 93.3 30 ............................TA CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 4215 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 4275 30 93.3 30 ............................TA AAGATACGTTTTTAGCTTTTAATGTGATTT 4335 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 4395 30 100.0 30 .............................. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 4455 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 4516 30 100.0 30 .............................. GTCCATTTTGCGGATACGCAGATGGGTTAG 4576 30 96.7 30 ............................T. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 4636 30 96.7 31 .............................A ACTTAGATGACAAAGTATTAAAGCTCTGTGA 4697 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 4757 30 96.7 30 .............................A TGGATGGATATGGCATAGGCAAAGACGGCA 4817 30 100.0 30 .............................. AGAGAATCGGTACTGGATAACCTTGAGCGG 4877 30 100.0 30 .............................. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 4937 30 96.7 30 .............................A ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 4997 30 96.7 30 ............................T. GAGAATTATGAAAAAGCAGGCTTCTATGAA 5057 30 96.7 30 .............................A CAGACATACTTCTTTCATTTGCATCGCCAG 5117 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 5177 30 93.3 30 ............................TA CGTAATAAGTACACGGTGCAATCGGTGCGT 5237 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 5297 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 5358 30 96.7 30 .............................A CGTGAACAATTGTTTTAGCTTTGAACATTA 5418 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 5478 30 86.7 30 A.....AA.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 5538 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 91 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : TAAATCCTATAGAACAGATGTGGGCATGGGTTAAACGTAAGCGTAAAGAATGGTTGATCGACTCAGTCGATGAGTTATTTCGAGTTTTTTTCGAATCTTGTATGAATAATAAAGTAGTTTGACTATAGAAGG # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9420-13409 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBO01000097.1 Acinetobacter baumannii strain TG15485 Acinetobacter-spp-TG15485_348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9420 29 100.0 31 ............................. CCCAAATACCTTCCTCAAGTTCACTTGCAGC 9480 29 96.6 31 ............................C TCAAGAGTTTCAGCGTCATAAGCTTTTTTAA 9540 29 96.6 31 ............................A TGTCGGCACGCGAATTAAAAGACGAACTTCG 9600 29 96.6 31 ............................A AAATCAAGCAACTACTGAAGGAAATTAAACT 9660 29 100.0 31 ............................. TGTTCGATGACTTGTATTTCATCGTCATCCA 9720 29 100.0 31 ............................. TCAGAATTTACATAAGAATCCTAATGGGAAA 9780 29 100.0 31 ............................. ATGGCAAATTTGAAGAAGTAAAAAGTCAGTT 9840 29 100.0 31 ............................. ATAGATGAAGCGGACATCGTAAATGCCCTTA 9900 29 96.6 31 ............................C TAATGACCCTTATAGCGCTTCTGGTAACTCT 9960 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 10020 29 100.0 31 ............................. TTATGCTCGATATTCGGCATACGGTTACCAC 10080 29 96.6 31 ............................A ATCCCCCCGATAAAGCTGTGGGGTTTGGTTG 10140 29 96.6 31 ............................A AACATGCCGATGAGTTTACGACCACCGAAGA 10200 29 96.6 31 ............................A TCCGGAGGATCACTAGGATCAGGCGGAGTAA 10260 29 96.6 31 ............................A CAATGCCCGCTGCTATCATGTAAGCAAAGGC 10320 29 100.0 31 ............................. TATGATGATTTACCCACTTCATTTACTAATG 10380 29 96.6 31 ............................A CCCCAAAACGTTGAACATTAGTAAGTGTTAG 10440 29 96.6 31 ............................C ATTAGTTTAAGAACGATTTTAAAAACATAGC 10500 29 100.0 31 ............................. TTCTGGGAGATTTTGAGAGAGGGCACACTGC 10560 29 96.6 31 ............................A TCATTACCCCAAGTAATGTAGTTATCGTATT 10620 29 96.6 31 ............................A ATGTATGTTTATTTTGATGCAGGCGGTAAAA 10680 29 96.6 31 ............................G TCAGCAGCACCTGCATCTTCATCCCATGTAC 10740 29 100.0 31 ............................. ACAAAAAGAAATGCTGAATTATTGGCAAAAG 10800 29 96.6 31 ............................C GTAAGTGTTACCTTACCTGCAGAAGCATCTT 10860 29 100.0 31 ............................. CAATAACCCAACCAATTGCCTCAATTAGCTG 10920 29 100.0 31 ............................. CTCCCTTAACATTAATACCCGCAACGATAAA 10980 29 96.6 31 ............................G ATCGTGAAATTTACCCAGTCAATGACAGCAA 11040 29 100.0 31 ............................. GTTTAAAAACATTGATATACTTGCCATATTG 11100 29 100.0 31 ............................. CAATATGCTAATCCACCTTCAGAATCTGCAC 11160 29 96.6 31 ............................A ACAATATGAAATCATTCACTCTGACTACAAA 11220 29 96.6 31 ............................A GTCAATGACAGCAATTTCATTGTCAGCAGGC 11280 29 96.6 31 ............................C CTGAGCCATTAGCTAAAGAAAGCAGCTTTAA 11340 29 96.6 31 ............................A GTTGTTCAAGCTGTCTCTGCTGTAAGTCAAA 11400 29 100.0 31 ............................. CCATTGTCTTAAGGATTGGGTCAAACGCTAC 11460 29 100.0 31 ............................. AAAGATACAAAATTTATCTGGGGATAGAGTC 11520 29 100.0 31 ............................. AGCGGAATCAAAATTGCAGCAGCAGCTACAG 11580 29 100.0 31 ............................. GCTGATCCTGCTTTAGTTGATCCTAATGATC 11640 29 96.6 31 ............................A ATCATTTGAACGCCTGGATTCTTTGCATAGA 11700 29 96.6 31 ............................A GTATTAGCACAGCAACCAACAATATGAAATC 11760 29 96.6 31 ............................A CGTAATGGTAAATCTCAATTTATGGTGAAAA 11820 29 100.0 31 ............................. CGGAAATGTTTGGATTTGCTTTCAACTGCTG 11880 29 100.0 31 ............................. CGTTTTCTTCATCGGTATAGGAAGCTGCTTT 11940 29 96.6 31 ............................C TATATCTGACCAAGTATATGAAGTACTTAAG 12000 29 100.0 31 ............................. TTAAAAGTCAAAGCAAACTCTTGAAAAAGTT 12060 29 96.6 31 ............................A GCAAAGACAGGCTTAGAAGTCACCTGATATT 12120 29 100.0 31 ............................. TTACTTAGCAGCCCAAATTTATTCTAACAAC 12180 29 96.6 31 ............................A TAATTACTTTAAGCAACAACCACAAGGCTTT 12240 29 100.0 31 ............................. ATGCAAATTTTAAATAGTTAAATTGCGAAAC 12300 29 100.0 31 ............................. ATTAAATCAGGCTGTCAAAATGGCGCGACTT 12360 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 12420 29 96.6 31 ............................A GTCATCTGGTAAAGAAATTACGTATTCGAAC 12480 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 12540 29 100.0 31 ............................. TAAGGGGTCAAACTATGAAATTAACCGATGA 12600 29 100.0 31 ............................. CCGACTGATCCGCCTGACCAACCGCCTCCGA 12660 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 12720 29 96.6 31 ............................A CCATGTGAACATGCATGCATTGATGCAATAT 12780 29 100.0 31 ............................. TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 12840 29 100.0 31 ............................. TGCACTAAACGCTTAGTTACAGACCAACCTT 12900 29 100.0 31 ............................. GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 12960 29 100.0 31 ............................. AACTCTATTGTTGTTATCCCGACATCTATTA 13020 29 100.0 31 ............................. CTATTTTTCCATTCGGCACATGCTTTTTTTA 13080 29 96.6 31 ............................A TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 13140 29 96.6 32 ............................A ATTACCCCAATTACTGCTACAGCACCCCCAAT 13201 29 96.6 31 ............................A AGTCTCGGTAAACGTAGAGATAGAGATACGC 13261 29 100.0 31 ............................. GTTAGGAGCCAAAAACTCACTTAAGATAGCC 13321 29 96.6 31 ............................A TAGTCGCTTGCGGTACGATCTTAGCTGCACC 13381 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 67 29 98.3 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTCAAATGAATAAGTCGACACCTAAAATTTATCGCACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCGTGGGAATATTGCCATTTGGTTTGATCCCAAAACACAATGGTATGCTCAACCAAAAAGCCAACATGGTCGAAATCAAACTTATTCCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //