Array 1 1793502-1794404 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017527.1 Mannheimia haemolytica strain 1563 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1793502	    32	  93.8	    36	C....................C..........	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1793570	    32	  93.8	    34	C....................C..........	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1793636	    32	  93.8	    36	C....................C..........	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1793704	    32	  93.8	    35	C....................C..........	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1793771	    32	  93.8	    34	C....................C..........	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1793837	    32	  96.9	    34	C...............................	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1793903	    32	 100.0	    35	................................	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1793970	    32	 100.0	    34	................................	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1794036	    32	 100.0	    35	................................	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1794103	    32	 100.0	    35	................................	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1794170	    32	 100.0	    37	................................	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1794239	    32	 100.0	    35	................................	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1794306	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1794373	    32	  93.8	     0	..........T............T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        14	    32	  97.1	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 8.96
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.10,-1.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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