Array 1 3417-3744 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHAOD010000032.1 Vibrio cholerae strain C16.2.29 Scaffold32, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      3417	    28	 100.0	    32	............................	TATCTGCCAATTTCCAGATGGTTCGATGATAT	
      3477	    28	 100.0	    32	............................	CAAAAAGATCAGCAATTCAATTTTCGATGATC	
      3537	    28	 100.0	    32	............................	ATCGCTGCCTTTGGTTCGGCTGTCATCGATGC	
      3597	    28	 100.0	    32	............................	TATCAAGGCAAAGGGCCAGAAGCGATTGCCCA	
      3657	    28	 100.0	    32	............................	GTTTGGCGCTTTGATATGGGTTGAATGTTCTA	
      3717	    28	  96.4	     0	........................A...	|                               	
==========	======	======	======	============================	================================	==================
         6	    28	  99.4	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                	       

# Left flank :   GGGTGAGTGCGATCATTTTGGGGAAGCATGAGTTATTTGACAACAAAGGTACAGGTAGAACACCGCTGGACGTTTTAATCGAAGTATTAGCGGATAAAAATGTACCTATATTTTATGGTTTTGATAGTTGTCATACGCATCCGATGCTCGTCACACCATTAGGTGTGCGAGGTACAATCGATTTCGACAATCATACCTTTAAGCTAGAAGATCGTTGGGTAAAAGCAAAATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGGTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG
# Right flank :  TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCCATTAATCTGTACTTTGGAATAGTTGGAATCAAAATAAAAACGTAGTAAGTTCTTTATCAGAATTAGTGGAAATAGGCTTTGTTGCGTAAATCGATGGAACTAAATCAATAGCTTACGATCTGATCGGCTACATTCATTCACTCTGTAGCCTCATGCCGAAACCACGTTACAAAACAAACAACTGGAAACAATACAATCAAG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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