Array 1 7731-5182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMUA01000035.1 Listeria monocytogenes strain F4233 F4233_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7730 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7664 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7598 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7532 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7466 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7400 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7334 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7268 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7202 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7136 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7070 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7004 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 6937 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6871 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6805 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6739 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6673 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6607 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6541 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6475 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6409 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6343 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6277 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6211 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6145 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6079 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6013 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 5947 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 5881 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5815 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5749 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5683 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5617 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5551 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5485 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5418 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5352 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5286 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5220 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5185,5188,5193] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49291-50619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMUA01000045.1 Listeria monocytogenes strain F4233 F4233_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49291 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49357 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49422 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49486 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49552 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49564] 49620 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49685 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49750 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49816 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49880 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 49945 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50010 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50075 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50138 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50201 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50267 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50330 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50395 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50461 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50526 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50590 29 93.1 0 .......................A....C | C [50613] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //