Array 1 986599-987846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007559.2 Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 986599 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 986660 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 986721 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 986782 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 986843 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 986904 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 986965 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 987026 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 987087 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 987148 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 987209 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 987270 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 987331 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 987392 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 987453 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 987514 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 987575 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 987636 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 987697 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 987758 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 987819 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 995791-997265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007559.2 Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 995791 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 995852 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 995913 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 995974 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 996035 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 996096 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 996157 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 996218 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 996279 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 996340 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 996401 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 996462 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 996523 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 996584 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 996645 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 996706 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 996767 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 996828 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 996889 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 996992 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 997053 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 997114 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 997175 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 997236 29 100.0 0 ............................. | A [997263] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //