Array 1 1260-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSP01000031.1 Lacticaseibacillus paracasei strain DPC4536 DPC4536_Contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1259 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 1198 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 1137 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 1076 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 1015 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 954 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 893 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 832 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 771 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 710 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 649 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 588 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 527 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 466 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 405 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : CGTGGGCTCGGAGATGTGTAAAAGAGACAGGCTTAACAAAACATCAAGTTTCCCCCGCACATGCGGGGGTGATCCCTATTCTTTTACTGGNGCAGGCAAAACTTATC # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 282439-283931 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSP01000006.1 Lacticaseibacillus paracasei strain DPC4536 DPC4536_Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 282439 28 100.0 33 ............................ TGAACGCGGTTCTAATGTCTGACAACAACGGCG 282500 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 282561 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 282622 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 282683 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 282744 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 282805 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 282866 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 282927 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 282988 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 283049 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 283110 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 283171 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 283232 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 283293 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 283354 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 283415 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 283476 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 283537 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 283598 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 283660 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 283721 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 283782 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 283843 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 283904 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCGATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //