Array 1 141455-147708 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVA01000016.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 141455 37 97.3 36 ....................T................ GGAGGAGAAAAATCGCATTGTTGGAGAAGAGTTACG 141528 37 100.0 38 ..................................... CTCTTTGCTATTGTTTGCGGGTTCCTCGGCTCAGTGCT 141603 37 97.3 35 ....................................G CGACAACACAAACGACGGAGGTGCAACCATGGCGA 141675 37 100.0 36 ..................................... TTTTGTTCGCCGCGTTGAGTCTATCGGTTTGACCAA 141748 37 97.3 35 C.................................... TTCTTGCGGGCTAGTGTCATGCGGTTGCTGCAGGC 141820 37 100.0 36 ..................................... TTTAAGAGAGGAGTTTTACTCAAGTATACCTTTGGC 141893 37 100.0 36 ..................................... TTAGCTCATCCTTGCCGTCTCCTTCCAGAAGAAAAG 141966 37 100.0 35 ..................................... GCTTTTTGGGGGTAGAAATAGCGAAAAGCTAGGGA 142038 37 100.0 35 ..................................... ACCACGGAAGTGGAATCGGTAGTCACAATTGATGA 142110 37 100.0 37 ..................................... GCTGCAGCAAGATTGTCTCTGTGTCGCCGAGGAGTCG 142184 37 100.0 36 ..................................... CATACTTGAATCCGCCGTCACGCAAGATTTCTTGAT 142257 37 100.0 36 ..................................... GATTTGAATTTGGATTTGGATTTGGCTCTGTTTTGA 142330 37 100.0 35 ..................................... GCCGATATGGTATCGCCTCCGGTCAGTCGCTTGAT 142402 37 97.3 35 ....................................T TCCCGACCAGTTCAGCCCGATGTTGCTTAAGGACA 142474 37 100.0 38 ..................................... AGGCTCAGCAAGCGGCCGAGCCTGAAGTGCCGTACGAA 142549 37 100.0 36 ..................................... ATCAAAACCGTCATGAATGGCCTGCACGGCACGATA 142622 37 100.0 36 ..................................... TAGACTCGTGAACACGAACGATAGGTTCAATCTGCT 142695 37 100.0 38 ..................................... GTGTAAAGGTCTAACAATGCCTGTTCATCAAAGTAAGT 142770 37 100.0 36 ..................................... CAACGTCAATGAAAGGTTTGGCACCGGTCATTTCCT 142843 37 100.0 39 ..................................... TCGGTATGTTGTGGACCACGTGGGTGGATACAACGTTTT 142919 37 100.0 36 ..................................... ATCGAGCAGCAAGAAAAGGCCATTGAAGCAGCAGAT 142992 37 100.0 37 ..................................... GATCACAGGCCTCCTGCGCTGGCGACGGCAGCGCGAG 143066 37 100.0 35 ..................................... TTGCTTATTGCCATCAGCACGCAGGCGCCAGGCGA 143138 37 100.0 37 ..................................... CTCGATCAAGTTAGGCGATTTCGGGCACAACAGGCTG 143212 37 100.0 37 ..................................... GTGAACAGGGAGACGATGCTGGAGTAGGTGAGGAATG 143286 37 100.0 37 ..................................... GTTCGAAATCCCCAAACCGGCCAAATAGAGGTACATG 143360 37 100.0 36 ..................................... TTCAGGAGACGGTAAAGAAACTGATCGCCCTAAAAG 143433 37 100.0 36 ..................................... TTTGCAGTACAACGTGAGCCGGCCTTGTGTTAACTG 143506 37 100.0 36 ..................................... GACATTTTAAATTTCTCCCCAAAAAATTCCGTTCCA 143579 37 100.0 36 ..................................... TCCACCTATGACGATGATGGCAATGTGTCGCAAATC 143652 37 100.0 37 ..................................... CCCAATCCGAGATCACTCTATTCACCTGCTCGGCGAT 143726 37 100.0 36 ..................................... GTTGAGAAAGACGCTGCTGGGAACCGAAAATTCAAT 143799 37 100.0 35 ..................................... ACCTTGCGCGGATAATGTTGCTGGCGCACACAAAG 143871 37 100.0 36 ..................................... GAGGCACAGATAGAAGCGTTGGAGAAACAGAGCAGG 143944 37 100.0 36 ..................................... CCTCCTATAAGATTCAACTCGCGCACTTACTTATAC 144017 37 100.0 35 ..................................... CAGGTATCTTTCTCGGGTAAATCGATAAATGGAAA 144089 37 100.0 37 ..................................... TGTGGCTGCGAAGAAAGTGCAGTGGAATTCAGTGCGA 144163 37 100.0 38 ..................................... CCTAAGACAGACTTAAACCAACCCCACAACACTCTGAT 144238 37 100.0 37 ..................................... GCTACCGTTCGTCCTGGACGACGCGGTGCATGCGGTG 144312 37 100.0 35 ..................................... GCCGCCGGCTACAATCATACCCTCGCCCTCAAAAC 144384 37 100.0 39 ..................................... CTCGCCGCAAACGATATTCTGGGTATCGCCGCGATTATG 144460 37 100.0 36 ..................................... ATTGTTACACCGAAAGACACGTCTCAGTGGAAAAAC 144533 37 100.0 38 ..................................... TTGCTTTCCAGATTCTTTCGGCTGCGAAGTACCTGGCT 144608 37 100.0 37 ..................................... CTTTCAGTTCTACCCTCGGATTATAAGTTACCTACAG 144682 37 100.0 38 ..................................... CAGTATACGAAGCCGTTGGTAAATGCGGCTACGATCCC 144757 37 100.0 39 ..................................... CGGCGCCGTGGCACTTGTTATGGCCATGGGCATTGCGCA 144833 37 100.0 36 ..................................... CTGGAGAAACTGGCGGTCGCTAATGTTGTACTGCAA 144906 37 100.0 35 ..................................... CTTCTGCAGGGACGACCTTGAGCATTGCTGAGGGG 144978 37 100.0 35 ..................................... AATGAACTCTTGGCTGCTGGTATCGCCGCAATACA 145050 37 100.0 38 ..................................... TCAACACGCGACTAATGTATGGGCTAAAGCTTGTGGAG 145125 37 100.0 36 ..................................... CCTTCGTGTGTCCTAGTTTACCGGGCGAACCACAAA 145198 37 100.0 39 ..................................... GTCCTTTAAAAAAACATATTCCCCATCCTTCTCTGTATA 145274 37 100.0 35 ..................................... CAGAAATTATGGTCAAGTTGCTGGAATTGTTCACT 145346 37 100.0 35 ..................................... GTCATAGGTATGCGAACCGATGTTGCGCGACTAAG 145418 37 100.0 37 ..................................... GTTGTGAGGAAGGCCCCACCAAGTCGGCATCTACAGC 145492 37 100.0 35 ..................................... TGGCCAAAGAAGCGCACGAAAGAAAGAAGGGTGGG 145564 37 100.0 36 ..................................... TCGCAATTTCGCACTGCTCATGGAGCAACGCACTGG 145637 37 100.0 37 ..................................... CCGACGAGGTGCGGGCGGCTGCGCACGCAATGAACCA 145711 37 100.0 36 ..................................... CTTTGTTGCTGAGCCTATTGCAGCAGAGGATTGGAT 145784 37 100.0 35 ..................................... GTTCTGTGGGGCGCTGGCTCCTGTCTTATCCCGAT 145856 37 100.0 35 ..................................... ATCCAAGCCCATGGGCACCGATGCATCATCAGCGG 145928 37 100.0 35 ..................................... AACACCCTGATAAAATTCACTTATCCGCCCCTATA 146000 37 100.0 36 ..................................... AAGACGCGTGCTGAGAGGATATTGGCCAATGGTGGA 146073 37 100.0 35 ..................................... ATGGAGTAAGTCATGACCACGAAATTAATCATCAT 146145 37 100.0 36 ..................................... TGCCGATTGGGTGGTGCAACGACTCCATTCTCCCGA 146218 37 100.0 35 ..................................... GATGTCGTATTCGTTAGCAGGGTTGCCCCTGGCTA 146290 37 100.0 38 ..................................... CCTTATCCGCCCCTATACCAAACGTAATGGCTGACGAA 146365 37 100.0 35 ..................................... CCTTCGCACAATCTCCTGGAAGCTCTCTTTATCCG 146437 37 100.0 36 ..................................... CTTGTTTGTTCGGCAGTATCTGGGATTTTCTTTACC 146510 37 100.0 38 ..................................... TTGGCAAGGAGATTGAATCGCATTCAGACCTTTTTCAC 146585 37 100.0 35 ..................................... GCTTATTCAATAACAATGGAGTTTGTTATGGACCT 146657 37 100.0 36 ..................................... GTACAACGCGCACCCCGGATGGAATATGACACCTCC 146730 37 100.0 38 ..................................... GCCGTCCCATCCGGCGCATCCACGAGCAGGCCGGCCAT 146805 37 100.0 35 ..................................... TTGTTTTGTCCTTGACGTCAAGCAGCATATATTGC 146877 37 100.0 35 ..................................... CGCCAGAGAACGCGAGGCCCTAGCAGCACCAGGTG 146949 37 100.0 37 ..................................... ATGATATGTTCACGCTTTGGCTTGACGAAGCCCAAAA 147023 37 100.0 36 ..................................... GCGGCTACCGCTTGCATGGCCGTTGAGCTGACCAAT 147096 37 100.0 35 ..................................... TTTGTAATCCACTCTTTCCGGTGGCTGATACTTCG 147168 37 100.0 36 ..................................... CAGCAACTGGGGTGGTATCATTCCACCCCAGAATAC 147241 37 100.0 35 ..................................... TTGGCTTGAGCCTAGGGCGTTCACACAATCCCCTC 147313 37 97.3 34 ....................................A AGCCTGCTCTCGACCTTGCCTCTTTCCGACACAT 147384 37 97.3 35 ....................................G AGGGTGACCGAGTCGGTCAACCCATGAAGTTACTG 147456 37 97.3 36 ....................................G TCGCATCCATGTGATGCGCGATATGGGCAATGGCAA 147529 37 100.0 35 ..................................... ATGAATGCCGGCATCGTCGTCCCAACAATGCCTCG 147601 37 97.3 34 ....................................G ATTGGGCAAGGCCCTTGTCGGGACAGTGAAATTT 147672 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 86 37 99.7 36 GCTTCAATGGGGCCGAGGCGGTAAAGCCTCGGAAATC # Left flank : GCAATAATTAGTCGTGAGATCTTGTAACGTTCCATGGTCTGCTTCCTTTCGTTGAGGTGTGTTCCGATAAATACCATCGACGTGACGACATTCCGTTAAAGCGAGGAGCCTCCCGGCGCACGCATGACCGATGGTCCACGTTGAGCGCCCACCACCGGGATCGTGCGCATACCAACGCAGTTTTCGAGTCTAATATGGTTTGACAAGACGCGCAAGCCTTCCGGCGCGACAGTGGATAGATCCCTGTCGTTGATGACCAACGCGATGGAGGCCAGGAAGAGGCGCCGTGCGTGTTTCAATATGGTGCAGCGTTGCGCATAGGGGCGTTGTAGTACCAGCGCTGGAGAGCATCTTTTGAGGACAAGTGAGGATGCCATCCATCCCACGGAGTAGATAGGCGAGCAGTCTCAGAAATCGTCGCCAGAATCAGCGTGAATTCCCGATCAAAATGGCTTTAATCATCCTGTCGCCAAATTCATTCGGCCCATTGGGACTATGAT # Right flank : CCCGCCTTTGTCGTTGGCGTGTTCGCACGGTTTTGCGGGTTTGGATTCGAGCGGTGATGATCGTCGCCCACAATGTATCCACAACACCGTATTCCATGACCAGGACCTCCCCCCCTTACCATTTTCAGTTTTCAAAGACCGTCGGCTTTGCGAGCGCTGCCGGGCTTCGCCAGCGCACTGGAGCGCTCGCGGCCCATGGGCAGCTCCACCTCATACTATGATCGGCTCCTTAGGAATGGGCCGGTACGGCTTTCCCAAGCTTAAGACCTTGGGCTGCACGGCGTCTGCTGGTCCCAGATCCAAGATCAGCACATGGTCATCTTGATGATGAATAATCTTGCGAACGGTTTCTTCCATGCGTAGCCGCCGCATTCGATTCAACCGGCATTGAAACACGGAAAGTTGCACCCATTCGCCATAAGCCTTCATGGCTGTGTAGAGACGCCGCCATCTTTTGTCATCGCGAATATCGTAACAGACAAGATAGAGATGTTCCATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGAGGCGGTAAAGCCTCGGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 84291-96058 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVA01000012.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 84291 36 100.0 35 .................................... TGGGTCAACCGTATAGATTGCAAGGCCTCTACCGC 84362 36 100.0 37 .................................... ACAAAAAAAAGGCGCACTCACGTTGTGAGTGCGCCAC 84435 36 100.0 35 .................................... AAAATAATAGAACTCTATTTCACGATTCATGCATG 84506 36 100.0 37 .................................... GCCCTGGTCCATGATCCACCTGGAAACGTCCAGGTGC 84579 36 100.0 37 .................................... AAATCATCCGCCTTCAACCGATGCCCCAACTTCCTCA 84652 36 100.0 35 .................................... TTTACCTCCCATTTTTCGAGTGAACAAAAAAAAGA 84723 36 100.0 36 .................................... TTTTTCGAGTGAACAAAAAAAAGACGCAATGGCACT 84795 36 100.0 34 .................................... AGAATCTTTATTTGGGAACACTCCGTCTACTTCG 84865 36 100.0 37 .................................... ATATGGAGACCAGGAGCCAACACCTTGCTCATACCCG 84938 36 100.0 35 .................................... AATAGCTCAGCCATTCTCTTGCCTTGTCTTCCATT 85009 36 100.0 40 .................................... GAGTTAATGTCCCCAAGATCAACATCTTGGGGCAAATCCA 85085 36 100.0 38 .................................... CCGCTCTGCTCCCCTTAGGTTACTCTAGCTCCCGCAAT 85159 36 100.0 37 .................................... TGAAGCGGGGCAAACAAAAAAGGGGAGACAGAGCGGC 85232 36 100.0 35 .................................... AATCGCCCAAACCCCTCCACCATTCATGGTGAGTT 85303 36 100.0 37 .................................... AATTCGGTATCACCCCATGAAAGCGCGAGACCGAATT 85376 36 100.0 37 .................................... AGGGGTTAACAAAAAAAGGCGCACTCACGTTGTGTGA 85449 36 100.0 36 .................................... GAAAGCGCGAGACCGAATTGCCCAACTGAAAACTGC 85521 36 100.0 36 .................................... CATTTTGGCCTCCATTGCTTGTGGTGAACAAAAAGC 85593 36 100.0 37 .................................... GTGTGTGAGTGCGCCAAAGTTTAGCCTAGGTTTTGAA 85666 36 100.0 36 .................................... CTAAAGCATCCATGTCACAAGGCCTATGCTTCATGA 85738 36 100.0 37 .................................... AAAAATACGGCTTCAGAGATTTACACTTGGCCGTAAG 85811 36 100.0 35 .................................... TTGCTATAGAACTGGACCATAATCTCCATTTTTCT 85882 36 100.0 37 .................................... CTGCGACCAGGATTGCTCCTGGTCTCCAGAATCTATA 85955 36 100.0 37 .................................... CGCGAATCCGGCTCGTATCACCGGCGGGGAACCTCAT 86028 36 100.0 37 .................................... TTGTCCGATTGACCACAACGGACCAATGGTCCGTTGG 86101 36 100.0 33 .................................... TGTTGAGGCATCAATCCGCCCGTTGACCCAGTA 86170 36 100.0 36 .................................... AAGAGCCCCGACAATGCCGCTTTCCACCTTGCCACG 86242 36 100.0 37 .................................... GCTGTTTGGTTCTTCATCGAACCAAACAGCCCATTGA 86315 36 100.0 40 .................................... CAAAGCACATTGACTCCGCCACAATCATACAGAATGATTG 86391 36 100.0 38 .................................... CGCTTTCCATTTCACCATGGAAAACGAAGGTTGTCCGA 86465 36 100.0 37 .................................... TATTCCAGCTCGTCTTTCACGGCCTTGAGGCCGTAGA 86538 36 100.0 35 .................................... ATGCACTTTCTCGCACAATGGGAACTCAAAGCGTT 86609 36 100.0 36 .................................... AATGACAGCCTGTGAAGACGATGTTGATCTTGTCTG 86681 36 100.0 36 .................................... AACCAAGCTTGATCCTTTCCTGGTTTCGATATGCAG 86753 36 100.0 37 .................................... ACTTGGCCGTCTTTTGTGATTAGCTTGTAATCACAAA 86826 36 100.0 36 .................................... CAGCACTTTACATGAACACTCAACCCTAACACTTCC 86898 36 100.0 39 .................................... CCCATGCGTCTTCACTAAACCCATGGTCAATGATAGACA 86973 36 100.0 35 .................................... TCCTTTTCTAATTCAATACTGATTCTCATGGCGCT 87044 36 100.0 35 .................................... TCGCACCCCCTCGCCGACGGTCTCCCGCCGGCCGT 87115 36 100.0 36 .................................... ATCGTTTTTCTTTTGTTACGCTGATCCACATGATAA 87187 36 100.0 38 .................................... GATTTGCGGTATAGATCGCAAACCCCCTGGCAGTTGAA 87261 36 100.0 36 .................................... TTTCTTCCCCCTTTGCTCAAGTGTCTTGCGCGATGT 87333 36 100.0 37 .................................... TTACCCGGATCCCAGCCCCGGGATCCAGGACGAGTAA 87406 36 100.0 37 .................................... TGATATGCAGGCCCTATGATATCTATCATTTTGCCTG 87479 36 100.0 39 .................................... ATAGACAAAGGCCGATTGATTCGGCCTAAGCTCAACTAA 87554 36 100.0 36 .................................... TTAATCCGGAACCCGCTTCCTGGTTCCATGATTAAA 87626 36 100.0 38 .................................... TCATACTTGTGTGTTTCAGAAATAAATTTCAACACACG 87700 36 100.0 36 .................................... TTGTTTTTCGTGTTTCACGCGGACAAAAGCCGATTG 87772 36 100.0 39 .................................... CAATAAGGTTAAGCTGAACTGAAACTTGATAGGCAGAAG 87847 36 100.0 37 .................................... CAGTAAGAAGCGTTCCTTTTTTTGTTTTAATGATACT 87920 36 100.0 36 .................................... GATTCCGACAAGCTATCCCAGAAACGCTGGGAAACA 87992 36 100.0 36 .................................... CGAGGTAAAGCCATTCTCGTCTTGCTCGAAGCCCAC 88064 36 100.0 38 .................................... AACAGCTACCCTTTTGGGTTCAGTGCCCACTTGAAAAT 88138 36 100.0 36 .................................... ACGATCCGGCTCGCCATACAAGCGGCCGAACCGTCT 88210 36 100.0 36 .................................... TCGGCACGATGACCAAGGGCAACAACCCGCACGTCT 88282 36 100.0 36 .................................... CTGGTAAAGATTCCATTGAGGTGATTCACGATTATG 88354 36 100.0 35 .................................... GCTTTTGATGGACAAAAAAAAGACGCAACGGCACT 88425 36 100.0 36 .................................... TTCTGATATCCATTTTTACTCCTCCTATCCTCATGT 88497 36 100.0 36 .................................... CATTCATTTTCTTTAAGTTTTGCCCAATAATTATCA 88569 36 100.0 36 .................................... CTCCCTGTAACGGTTTTCCAATATTCGAATGTGTAG 88641 36 100.0 38 .................................... TTTGCGCCATTCGGCGCGAATGAAATCCCATCCTTATA 88715 36 100.0 35 .................................... TTTTTGATAAAATGAAATTCTGATCTCCATTTTTA 88786 36 100.0 38 .................................... CTCAACATCCTCATTTAGGTTGTGGTCTACCGCAAGGG 88860 36 100.0 37 .................................... TTTCGACGCTTGCTCCGTTTTGATAAAATGAAATTCT 88933 36 100.0 37 .................................... CTTCGGTCCATCTTGTTTTTATGGACCATGGCTTGTC 89006 36 100.0 40 .................................... ACAAACGTCGCGTGTTTTATCCTAACGACACAGTGTTCGC 89082 36 100.0 37 .................................... TCTTCGTGCACAAAAGTTAACGATTTCCCTTCATAAT 89155 36 100.0 37 .................................... GCTATCCCTTCCTTTATGATGATGTCGTTCTCTTTCT 89228 36 100.0 37 .................................... GATGGACCATGCACCATCTTCGTAATTGCGGATTTCA 89301 36 100.0 38 .................................... ACAACGGAAATTCGAAACGTTCCCAGTCGACAACTTCG 89375 36 100.0 36 .................................... TTGCCCAAGCGGCATAATCGTGAATTACCTCAATGG 89447 36 100.0 35 .................................... TTCTTTGGGATCTCCATAGAGACGCCCATAGCGTC 89518 36 100.0 37 .................................... TGAGACTTGATAGGAGAACGTCATCACTTGAAACATG 89591 36 100.0 35 .................................... CGTTATTCCTTCCGGTGCGTCTTGCTCGTCAAATG 89662 36 100.0 37 .................................... CATGCGTAACCCTATCGAAGTCCGTCATGATTTGTAA 89735 36 100.0 36 .................................... CTAATGAACCATTGTTCATCAGGGTCAACGGTATAG 89807 36 100.0 37 .................................... CAATCATGCATCTCGATTTCTACCCACCTCCCCAATT 89880 36 100.0 39 .................................... TATTACGCTGATCCACATGGTAACTTCCTCCTGTGCTAG 89955 36 100.0 37 .................................... AAAAAAGGCGCACCTACACTACGTAGGTGCGCCATTG 90028 36 100.0 37 .................................... ACTGTAGCACCTTCTTTTTTTGCTTGTCCTTCCACGG 90101 36 100.0 38 .................................... TCACGCCGCAGTATCGGCAGGTAAACCTGCCGATTTCG 90175 36 100.0 37 .................................... CGTGTAAGTCACCTACGTAGAATTCAACGACTTTCTT 90248 36 100.0 38 .................................... AAACTGAACATCCCCATCTTGTGAAATCAGAGAAAAAT 90322 36 100.0 39 .................................... TGGCACTCTTGATAAAACACAAACTCTAGAATGTATTCG 90397 36 100.0 36 .................................... ATGATAATGAAACCCACAATGCTCGTGTAAGTCACC 90469 36 100.0 35 .................................... CCTCGGAGTACTCAATAAGACATGGCGGTTTGACG 90540 36 100.0 36 .................................... CGAAGGCGTTAGCCGGATTTTGCCTACTGACAAGAA 90612 36 100.0 35 .................................... CCCTAAGAGATCTTCTGGGGGATCATCAAACCATA 90683 36 100.0 36 .................................... TCGAGTGCTCAGAGAGACTAGCAGTCCCCGCGATTT 90755 36 100.0 36 .................................... TCTCACTCGGAATCCCGTTTTAGGATTCATGATAAG 90827 36 100.0 36 .................................... TGTGGTGAACAAAAAAGCGCACTCACACAACGTGAG 90899 36 100.0 36 .................................... TTGATGATCAAAACCGCATCGTAATAGGCATCAAGA 90971 36 100.0 37 .................................... TCGAGGTTTTCGGTTTCCGGAACCTCGACAAGACACG 91044 36 100.0 36 .................................... CTTTGCCGAGAGCCTTCGTTTAGGCTCTCGATAGCC 91116 36 100.0 37 .................................... GCAATGCCGGCGCGATGCGGCCCGCCGTGAGTTTTGA 91189 36 100.0 35 .................................... ACTGGATTATCCCGCCATGTCATCAGCCCGTCCTG 91260 36 100.0 36 .................................... ATAGACGGCCAAACCCGTGTTTCGCTCTGTTCGACA 91332 36 100.0 38 .................................... GTTGTAGTTATGCACTATCACATCCCACGTGGTTTCGC 91406 36 100.0 38 .................................... CCGAAGCCTTGCCCTAAGCTCTGGATCATTCCCATTCG 91480 36 100.0 37 .................................... GATTCGGCCCCAACTCTACCAGACTTTCGGCCCATTG 91553 36 100.0 36 .................................... CTGATTCTTTCGCCGCCTCGCTCGGTATATTCATAG 91625 36 100.0 37 .................................... TCACATTGCGGCCATGGCATGACCATGACATTATAGG 91698 36 100.0 35 .................................... AATGCCGACAAATCCCCAGTAAATACTCTGGGGAT 91769 36 100.0 36 .................................... TTGTCAGAGTGAACAAAAAAAGCGCACCCACACAAC 91841 36 100.0 37 .................................... CTTGGGGTTAAAAGATAGGCGCACCTACGTTGTGTGG 91914 36 100.0 36 .................................... TGTGGTGAACAAAAAAGCGCACTCACACAACGTGAG 91986 36 100.0 35 .................................... CCGTGTTTCGCTCTGTTCGACAAACCCCCAGCAAA 92057 36 100.0 37 .................................... TGTTCCACGTTAAGCACGACAATTTTTGGCCGTTCAT 92130 36 100.0 37 .................................... TGGGTTGCGCACCCACACGACGACTTCGCACCATGTG 92203 36 100.0 36 .................................... TATGGCGACCAAGCGCCCACATCTTCGCTGTACCCG 92275 36 100.0 38 .................................... ATGATGTTGTCATGAATAATCACGTGCTCAGTATTGAG 92349 36 100.0 36 .................................... ACAGAACATCTCTGGTACTTGGAAAGCTTAATTTTT 92421 36 100.0 36 .................................... AAATGCAATGGTGATTTTTTCTGGCGGGATATACGC 92493 36 100.0 36 .................................... TGGGCGTAATCTAATCATAACCCCACCTCCCCTTTT 92565 36 100.0 37 .................................... ACGGCCTTGAGACCGTAAGGGTTAAGTTGTTTGTTGA 92638 36 100.0 36 .................................... TATGAAGCCATAGGGTGTTTCCCTCTTTCTTTGCCA 92710 36 100.0 34 .................................... ACGGTTTTATAGATTTGCACTTGGCAGTAAGCCA 92780 36 100.0 35 .................................... ATGAATGATGGATACGGCATTATTGCTAGGAAATA 92851 36 100.0 36 .................................... GTAAATCCTGACGTGGCTGTCACCAGCCACAACGTG 92923 36 100.0 36 .................................... CCGATAAGAAAACTATCGGCTTTGCGATTAACTTGA 92995 36 100.0 36 .................................... AAAAGGCGCAACGGCACTACGCCGTTGCGTCTTATA 93067 36 100.0 36 .................................... TCCTTTGTAGTGCATGAGATCGCATTCGCATTCTGT 93139 36 100.0 35 .................................... CCTGTCTTTGAGTGAAAGACAGTTGCTAGGATGTT 93210 36 100.0 37 .................................... AAAAGCGCACCTACACAACGTAGGTGCGCCAGGATAC 93283 36 100.0 37 .................................... TTTCGACAGAAACTGTTCTCCCTGTAAACGTTTTCCA 93356 36 100.0 37 .................................... TCTCCGCCTTCTCCACGTGGTGCTGCTCGTACTTTGA 93429 36 100.0 34 .................................... TCGTTAACACATTCCCGTAAAGTGAAACGCTAAA 93499 36 100.0 37 .................................... AAAAACTTACTGGTGCGGGATAACTTCTAGCAATCCG 93572 36 100.0 37 .................................... AACTTCCTCATCGTCGTATGGGTTTTTGACCCATACG 93645 36 100.0 36 .................................... AGTTCAACTTCATCAACGTCTTTGCGGTCTAGGCCG 93717 36 100.0 36 .................................... CCGGCACCGGGATCCAGGATAAGTAAGCCGCACCGG 93789 36 100.0 36 .................................... AACATCAACGTGCTTCCCGTTGTACGAAACTGTGAA 93861 36 100.0 38 .................................... CAGACGGAATGCCTGAGCAATGGCCACCTTTCGAATCA 93935 36 100.0 36 .................................... TCAACGGTTCTCCGCACGCACTCAACCCGCACAGAA 94007 36 100.0 36 .................................... TTGATTTGGTCTCAATTCAATCTCGTTCGCTCCCGT 94079 36 100.0 34 .................................... AAAGTAAGGTTTCAAACCCTTTGCCCGAGCCGTG 94149 36 100.0 38 .................................... GTGAAATCCAGCATATTCATGCAAATCTCCTACATAAA 94223 36 100.0 36 .................................... CAACAACTTTTTTCCTCATGGCAATCTCCCTTTGCT 94295 36 100.0 34 .................................... ATAACCCCGTCGAAACGCGCTGCCGTCTTTATAA 94365 36 100.0 37 .................................... TATTATCTTTTTTAATGGATGACCTATCGTAATTTCA 94438 36 100.0 36 .................................... AATTTTTCCTACCGAACCCATTTTGCCACTTGATAA 94510 36 100.0 37 .................................... TCGGCACCATGCCGAATGATTCTCAGGCTCGTTCTCC 94583 36 100.0 36 .................................... ACCTTGTTGCCGTATGAAATAGTTGAAAGCTTGTGC 94655 36 100.0 35 .................................... TTGCCTCGCTATGAAGTCTTTCCAATACTCAAAAG 94726 36 100.0 38 .................................... CCTTACGCCGCAATATCGACAGAAAAACCTGCCGATCT 94800 36 100.0 37 .................................... CAACGTAGGTGCGCCAAAAAACTTCATTCGTAATGCA 94873 36 100.0 36 .................................... TTTTTCCTTCCTTGCCACACCTTCTGTTACGATAAT 94945 36 100.0 37 .................................... GAATATTCACCAACAAGTTGTATCCAAGAACCCTTCC 95018 36 100.0 36 .................................... TGGGCGGTTCGTCGAACCAAACCGCCCACGTCTTTT 95090 36 100.0 36 .................................... AAAAAAGGGAGACAGAACGGCACATGAAGCCGTTCG 95162 36 100.0 38 .................................... GTCTTGTCGTTGAGCCGAAAGCTAAACTTGTTGTTCCT 95236 36 100.0 38 .................................... AATCAAGTTAACGCCACCTCGATCTTTGATGATGATCG 95310 36 97.2 35 .........C.......................... GTTGTGCCTTTCGTCCTTTATTCCCATTCGCCACG 95381 36 97.2 36 .........C.......................... ATTGTGACTTCGATCTTCATGGTGCCCCCCCTATGT 95453 36 97.2 35 .........C.......................... CGGTCAACAAAAAAGCCCAAAAGACCACAAGGCCT 95524 36 97.2 31 .........C.......................... GCCTTGGCCTTGGCCTTGGCCTTGGCCTTGG 95591 36 94.4 34 .........C.....T.................... CAGAAGCGCTGAGCGATGGGAAATCGCACGCCCT 95661 36 97.2 38 .........C.......................... ACGGCTTGCTGCCAAATGCAGTCTGAAAAATCTTTTTA 95735 36 100.0 34 .................................... GCGATTTCATCGCCGTTAGGTATCTCGTGAACGC 95805 36 100.0 37 .................................... GGAGCGGATTTTTGAGAAATCCGCCCCTTCTAGATTG 95878 36 100.0 37 .................................... ATGGTGCCCCGATCTAAACAATAGGATCCTAGGTTCG 95951 36 97.2 36 .........C.......................... GAAAATATTCCACCAGATCGTCAGGGATGACTTTGA 96023 36 97.2 0 .........C.......................... | ========== ====== ====== ====== ==================================== ======================================== ================== 163 36 99.8 36 GTTCGAAGGTAGGCCCCGATTCGAGGGGATTGAGAC # Left flank : GACGCTCATGGACCGTGTAGACCGGCTCATTGACCACACAACGGACACGGTGCGCTTTTACCGTCAGTGTGAAGCGTGCCTTAAGTCCTTTGAGCACGTAGGTCTGGGCCTGACGCCGGAAAGACAAAGCTACGGGGCGGTGTAAAGTGACCGATCGCAGTTTGGAAGGAGTGGCCTGGCAGGTATGGGGACGGCACTTCGAACGGGCCTGTTTGAGGCCAAGGCATGACCAAACGGCTTAAGTTCAGGATATGCGGGCGAAAGTGCCAAGTTTTGGGAGGTCCTTTGCCCATTTGGACCGAGAATGTCTAACTCTTTGAAAACACTCAACCCACTTCCAAACGGTGCTCCGAACCGTGATAACAAAGCAATGACAACATGTTACGATGGTCGATGCCACTTCAGCGCCCGCATGAACCCCTCACAAGGTCCCCCTTAAAGAGAGGTGCTCCCAATTGCGACCCAAAAACCTTGACAGGACGCGGCTCGGCGGCCTAACA # Right flank : CTTTAACCATTTTGTAGGACTTATTAAGGAGGAAAAAGTATGATAAAACAATATGTAACAGAATTTCCTTACGTTGCCGGTATTGCTGGAATGGTACTCGGGTACTTAGCCGGGAGGTACCATGGCAAACAAATTCTAAAATACTATAAAAAGAAAATCGAGGATTTAAAGACAGGTATTAGTTATTATGTTCTTGATGAGGATGATGGGGAGGTGTAGCTATGATAAATCTTGCTGTGTTCTTCAGTATGTTCTGGATATTCTACTTCATCGGTATTGAGTCCACCTATAAAGGATAGAACAATATGAAAAGAAGGGAGGCACTATCGTGCCTCCCGGACTATTGTGTTGGTCTATTTGTGTTTACTGGTCTCAAAAAGCCCCGTTGTATTCGTTCGAAGGCAGGCCCCGATTCGAGGGGATTGAGACCCCGATGCATCCGGGCTATATATTCTCTCGAGTAGTTCGAAGGTAGGCCCCGATTGGAGGGGATTGAGACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAGGTAGGCCCCGATTCGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //