Array 1 244966-245624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYM010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0229 NODE_1_length_1009678_cov_62.068572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 244966 29 100.0 34 ............................. CCGAATAGTTCAAGTATTTTAAGAGCCTTCACTA 245029 29 100.0 36 ............................. CATTACATCACCGAGCTCTGATATTAAATCATGTCT 245094 29 100.0 36 ............................. TCGTTCATTTATATCAAACCTAATATAGCAAATAAC 245159 29 100.0 35 ............................. GTAACATTTACTATTTTAAAATATGAAGACTTAGA 245223 29 100.0 35 ............................. AGTGATGCACGAAATCCAAATTGGTCTCGAATACC 245287 29 93.1 37 .......T......C.............. GTAGCGAAGAAGACAGATCTATCATCAGTTCGATGGC 245353 29 93.1 36 .......T...A................. GATACTACGACAATGCACAGCGCAAAAACAGGTTCT 245418 29 100.0 34 ............................. TTCTGCTTAGACGTAGCTGTATCAGCAGTCCAAT 245481 29 86.2 17 .......T....C.A..C........... CTTTGTATCCAATCATT CTG [245504] Deletion [245530] 245530 29 86.2 37 ....A..T......A..C........... CAACGAATTCCGTTTTTTTAGAATGTTGCTGCCGCGA 245596 29 86.2 0 .......T.......CA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.0 34 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGACCGTTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATTGATCTTCCAGAAGACAAGCAATTCGACAAATTAACAACCATTTCAATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTGTTTTTGGTTGTCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTAATTGACGTGGAAGGAGTTTGGTGGTTTTTTCTTTTGAAAACCATGTCGGGAAGGAGGGGTTTTCGTTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTTCAGATACAACTCCATCATCGTCTATCAAGAATAAAAAGAGTGACTGCGATTTCAGCAGTCACTCTTCTTTTTAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTATCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCACCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAGACTTCTAATTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 261180-262987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYM010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0229 NODE_1_length_1009678_cov_62.068572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 261180 29 100.0 36 ............................. GTTTGGAACAATACGAAATTAAATTCGGGGAAAATC 261245 29 100.0 36 ............................. ATCAAAAATTTAGAAAAAATTGCGTTGATGAAAACC 261310 29 100.0 37 ............................. AACGGCAAAGTTTTTGGGAAACCGAACAACGGGGAAG 261376 29 100.0 36 ............................. GCTAGAGTTCGAGCATTCAGACGTGGTTGCAGACTC 261441 29 100.0 34 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAAC 261504 29 100.0 36 ............................. TCAGACAACGGTCCAATGTAGCCCAGTGCAAACGTC 261569 29 100.0 36 ............................. ATATTTTTAACCTCAATAGCGGAACATGGGAAGCAG 261634 29 96.6 34 A............................ TTTCAAGGAGCCGGTCCACGTTAAAATTAACTTC 261697 29 100.0 34 ............................. CTAAAATAACAACTGCTACAGCCAAACTAACACC 261760 29 100.0 37 ............................. CTACCAGGTGAGATGAACAATATCGGTAAACAAGGCG 261826 29 100.0 36 ............................. ATTTCTTTCATATCATTTTGAGTAAGCACGGGTTTT 261891 29 100.0 35 ............................. TTTTGTCGCGCTCTTCTTTCATTTCTACTCTTACT 261955 29 100.0 34 ............................. AATGGCGACACCGACATATTTAAGCACATCTTTA 262018 29 100.0 34 ............................. ACCGGAACAAGCGAGTCGGACGAATTCTATTTTG 262081 29 100.0 38 ............................. AATCAAATCGCTAAAATCAGACATGTTAACACCTCGAC 262148 29 100.0 36 ............................. TCACCTTGAAGTGGTAAACCGGGAGCCCACGAGATC 262213 29 100.0 35 ............................. ACAATCGAAATTAACGGCAAGGAATATGATTTGAA 262277 29 100.0 36 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCGTA 262342 29 100.0 36 ............................. AATAAAAGTAAGGACAGTATTAACAATCCAATTTTG 262407 29 100.0 37 ............................. TTGCTAGCAGCAATTGATTTTGTTAATACCACTGGTA 262473 29 100.0 38 ............................. AAAATTGCAGACGCAGCAATTTCAATTGTTATGGGATT 262540 29 100.0 36 ............................. AGAGTTTTTAGTGAGGGCTTGGCTTGAAGGCTACGA 262605 29 96.6 37 ...............C............. TACTTGTCTACATAGTTAATAGCCATTTTGCTATCTC 262671 29 100.0 34 ............................. ACAAGAAAGCCTAATCGCTTCATTTCTGAACTCA 262734 29 100.0 35 ............................. GCCCGAGTTACATATTTGATTACATTGCCCTTTTC 262798 29 96.6 34 .......T..................... TTTATTTAGTTCCTCCTTCTCATATTCCAAACAT 262861 29 100.0 68 ............................. CATGCTTCATCATTGCTTGTGTAAATGTAAATCGACCAGGTACAGCAGCTTATCAGTGACCGAACCGG 262958 29 82.8 0 ...............C.C....CA....C | C [262980] ========== ====== ====== ====== ============================= ==================================================================== ================== 28 29 99.0 37 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGGCAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGATCCCAATCCAAGTCTTTTCCCCTACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCGGCCACAATTACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGGAAAATCCCTCTTTTCTACTTTGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //