Array 1 165295-164655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZN010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA11 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165294 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165233 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165172 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165111 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165050 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 164989 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164928 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164867 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164806 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164745 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164684 29 96.6 0 A............................ | A [164657] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183041-181427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZN010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA11 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183040 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 182979 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 182918 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 182857 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 182796 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 182735 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 182674 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 182613 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 182552 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 182491 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 182430 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 182369 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 182308 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 182247 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182186 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182125 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182064 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182003 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 181942 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 181881 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 181820 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 181759 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 181698 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 181637 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 181576 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181515 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181454 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //