Array 1 72-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEL010000039.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain NBRC 13905 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72 28 100.0 33 ............................ CGCGTGATAGCCATGCCCGGCCGCCTGACGGCG 133 28 100.0 33 ............................ CCGGATCTCGCACCGGATGCCGCCCGGCTCCAG 194 28 100.0 33 ............................ TAGCCGGATCGTCTCGTTCAGCCTCTCCTCCAG 255 28 100.0 33 ............................ CCCCTCGGCCGCCCCGCCCGGGTCGGGCTGGGG 316 28 100.0 33 ............................ GAAGGCCGACAACCTCAACTTCCGGCACATTCG 377 28 100.0 33 ............................ GCACATTAGGCAAGTACACCGAGAGCCAAGTGG 438 28 82.1 1 ............G...A...A..A.T.. G A,TCCC [449,457] Deletion [467] 472 28 100.0 33 ............................ AGGGCCACGACCCAGGCGGTGACCTCATGACGG 533 28 100.0 33 ............................ TCGCGGTACCGGACAGCCGCTTCCACTGAGTCG 594 28 96.4 33 .......T.................... TAATGGGTGACCCGCACCTCGCGCCCGTCGGCG 655 28 100.0 33 ............................ GCGGTCGGCACGCTCTTGGTGCTCGGGCGCTGG 716 28 100.0 33 ............................ GCAGTCTCTATGAAGATCGCGGCTGGCTCCAAG 777 28 92.9 33 .....T............A......... ACGGGCCGCACCGTGGAATTCCACACCGTCTTG 838 28 100.0 33 ............................ GCGCGGCGTGGGCCGAGGTGCCGGCAGTCGCCG 899 28 67.9 0 ........TT........C.A..ACTGC | ========== ====== ====== ====== ============================ ================================= ================== 15 28 96.0 31 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : ACCGCGCTGAAAGGCCAGCCACCCGCCAGCCGCGTTCCTAACCTCTCAGGGCAATACATCTAGGGCCGGAGT # Right flank : CTCCTGCCGTGGCCATTCGCCCCTTCGTGCCAGCAGGCGCACCAAGCGGGGCACGAGCTCGCCGTCCGCGCATGTGTTCTGGTCCGCCGAGACCAACCCACTCTGTTGATAGCGCCGCTCCGATCGCCGACCAGTAGGTTTGGTCAGCGGCGGGCCCGCGCGCCCCGTGATCACGCCGTCGTACGCAGCGCAGCAGGCGGCTGGGGGATCACGGCCTGAGCCATGGCCTGCCGCACAGCGCGAAGGCCACCCGGAGGACCCGGGTGGCCTTCGCTAAGCCTGAACCCTGGGGGTATGGCCTGCCCTCTTCAGAGGGCTACCAGGGACGATGCCAGGGTCTTCGCTGATCAGCGTACCTACGCTCCGACTGCCGCGACCCGTCCGGCGCCCACCTCGAGGTCGGCGTCGACGTCGCGCTGGCCAGGTGCGAGGAAGGCGGCGTCGGCCGGTACCCGGGCGGGCGGCACCGATCCGCGGTTTGAGAATGGGCCCTTGGCGGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167498-166500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEL010000012.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain NBRC 13905 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================= ================== 167497 33 93.9 28 .............................T.G. CCAGCTTCCACGCCGACTTGCCGAGCAG 167436 33 90.9 28 .............................G.AG CCGGGCTCGACGTCACCCCCGAGAAGCT 167375 33 87.9 28 .............................AGTC CGGCCGCTGCCGAGACCAGATCGGGCGT 167314 33 90.9 28 .............................T.GG TCGCCTCCCGGCCGCTGCTGTTCGACGC 167253 33 90.9 28 ............................T..TC TTGGTGTGGTCCCCCTGGTTCCGCTGGA 167192 33 90.9 28 .............................AA.C TCGTCGAGTTCCTCCACCCGCCTCATCA 167131 33 90.9 28 .............................A.GA CGAGTTCGTCGTTGGCGGTACGCAGGAA 167070 33 90.9 28 .............................AT.A GCCGCGGGCTGAAGAAGCTCGCCGGCGA 167009 33 100.0 28 ................................. ATCAAGGCCGCCCCCTGTCATGATCCGG 166948 33 100.0 28 ................................. TCGGCCGCTCGTGCGGCAGGCCGTGGCG 166887 33 97.0 28 .............................G... ACGAACTCGTTCGCGACGACGCCTTCCC 166826 33 87.9 28 .............................TTGC GCGGGTCGGACTTCTCGGTCCAGGTGAT 166765 33 87.9 28 .......T.....................T.GC GGTACCGGACAGCCGCTTCCACTGAGTC 166704 33 87.9 28 .............................GTAC GTGAAGGGCTTCAAGCCGGCCCGCGACA 166643 33 90.9 77 .........A....................A.C GGGCCCAACGCGGGCCGCGCCGTCATGTCTTCCCACCGACGGCCGCTGAACGAAACCGATGGTGCTTGCCGTACCTT 166533 33 81.8 0 ......T...A....TC.......A.......G | C [166529] ========== ====== ====== ====== ================================= ============================================================================= ================== 16 33 91.3 31 GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Left flank : CGACGTCCAATCACTTCTTACCCCACGCCACAACGCCGCCGTCGGCACCGACGACGATAAAGACGAAGAACGCTCCGAACGGCAGGACGTACGCATGGTCCACCTCTGGGACCCGCACGCCGGGGTCCTCCCGGCAGGCGTCAACTACGCCGCAGGAGGCAACTGATGCCGTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGCCCACCTGCGCGGCGCCCTCAGCCGGTGGACCAGTGAAGTAGTACCTGGCATCTTCGTCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCTCCTTGTGACGGAGGTCGTGGGTAACGGCGCTGCCGTCCTTGTCCACCCGGCTGCCACGGAACAGGGATACGCCATCCGCACCGTTGGAACTCGCCGCAGGGTCCCCATCGACTTCGATGGTCTTACCCTAATTCGCATGACCCCCAACCCGAAGGCAAAGGAACTGCAAAGCCCTCCATAAGATGCAGGTCAGAAAGG # Right flank : CGTACAAGCCGGCGGCTGCCCGCCTCGCGTCTTCCCCGCCACGGTGATGACCGAGTGGTGGGGGGATGCCGGGACCTGATCGTCCTCGGCGAGAGCAATGACGGCATGGTTCAGGTGTGGTCGGGCAAGCCCACCGCCGCCGTCCGCGATCCGGCCCGGCACTCGCGTCGAAGCCCCAACGGGCCTTGGAGCCGTTCGCCGCCGGCCCTGCCCCGATGGCCCACATCGTGTGCGCCTCGCCGTGCACCCCGTCCTCGACAGGGCGTCACTGACACCCGCGGCACTGCGGTCGGTGAACGAACAACTGCGGTTGCACAAGCTGCTGGGCCGCTCCATCTCCGGCCTGCCCACATCACTGAACGGCGTGACCGGGGCTCCGTACGGGCCGGTGTGGCCGCTGGACCCCCCTGTGGCCGCACTACCTTTGGCGCGTCCGCGACTGGCTGACCCTCCAGCAGCACGCCACCACCAGGCAGTGGGCCGGACACCTCGCCGCCGCC # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGTGGGGGTGTTCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177409-177924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATEL010000012.1 Streptomyces thermoviolaceus subsp. thermoviolaceus strain NBRC 13905 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177409 28 100.0 33 ............................ TCCAAGGAGCACGCCCGGGTGATGGAGAACTTG 177470 28 100.0 33 ............................ TACACGGCGAGCCGCCGCGGGTCGCGCATCCGG 177531 28 100.0 33 ............................ GCCGGCATCAGGGTCCTGAACTGGCACGTGACG 177592 28 100.0 33 ............................ CGCGAGAACATGGCGCCGGCCGCGTGGGCAGCG 177653 28 100.0 33 ............................ CAGCCGGGCCGGGGTGGCTGGGGCGGGGCCGAG 177714 28 100.0 33 ............................ GAGCTGCAGACCGAGCGTGACGCCCGCGATCTG 177775 28 100.0 33 ............................ AAGAGGGAGGGAAAAGGGGGGCAGATTTCGCAG 177836 28 100.0 33 ............................ CGTCCCGCCGACCCCGCGGAGATCGCGCGCGAG 177897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CGGCCAGCTCAGCACTCAGGTACCGGCCTGCATGCACGGAGCAGAACTGAAAACCAGACAACTTCCCTATATCGTGCAGCCCCGCACACAACCCCACAACACTTCTCGCCCGCTCAACCTCACCGACAAGCCCAAGCCCCTCGGCAATCCTCACCCGCTGATTCTCGGACAGATACGCATCCCACAGATGCAGCGCCATCGCAGCCGCATCCAGACAATGCCGAATCAACGGATACGGCGGCAGCGCCGGATCCAGCCCCCTCGACTTACCCCACACCGACTCATCCGGCGCTCCCGGTCGCCTCGCCATCATCGTCCTCACCCCCGGGGCAGATGCCGTCCCAGTACCGAAGGCGGCATTCAAGCACTTCCCAGTGACAGCGCCACCGCCATCCAGCCCCCGGTAGAGTGACGACGTGCAGCCTCAGCCATCCCTAGATGACATGCTCACCAGAGCAAAGAAAAGGCAAAGCCCCTCTTGAGTGCCTGGTCAGGAAGGG # Right flank : TCCTCTCATCGCGTCGTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //