Array 1 13873-17801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHW010000014.1 Chromobacterium aquaticum strain DSM 19852 contig_0000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13873 28 100.0 32 ............................ ATTGAGCGTGAAGCGGATCTGATGCTGTCGGA 13933 28 100.0 32 ............................ GCGATACCACACAGTGGCCGCAATCGTTGCAA 13993 28 100.0 33 ............................ ATGCCCGAAATGATGGGCTATGGGTTTGCTCGT 14054 28 100.0 32 ............................ GTAGGCGGCAAGGCCTTTGAGGCCCTGCTCAA 14114 28 100.0 32 ............................ TCGTCAAAATGAGAGGAGGTCATCATGTCCGA 14174 28 100.0 32 ............................ ATGAGCCTGCAAAACCTGTCTTGCAAAGTGCT 14234 28 100.0 32 ............................ ATCCAGTACTTGGTGACGTGGCCAAACGGCGG 14294 28 100.0 32 ............................ AGACGCCGAGGCCGCCGCGCGCCTGTATGTAG 14354 28 100.0 32 ............................ ATCAGCAAAGGCCAGTTCAAGGGGCTGCTGGT 14414 28 100.0 32 ............................ ACATGAAGCGCAGGCAGATGCCGTTGGCGCGC 14474 28 100.0 32 ............................ CTACGCTGCAGACCAGCGCAAAAGTCCACATT 14534 28 100.0 32 ............................ ACCATGAATGCTCGTTGTGATGGGTTTGCGCT 14594 28 100.0 32 ............................ TGGACACCTCGGACGGTACAGCCTGGGCCACC 14654 28 100.0 32 ............................ CGGAAGTGCCGAACCTGGGGGACATGACCAGG 14714 28 100.0 32 ............................ AAGTCGCATTGAGCAGCTCGCTCTTGCGCACC 14774 28 100.0 32 ............................ ATCGACGCAGCAATGGAGCCTCCGCGCTGCAC 14834 28 100.0 32 ............................ GTACACGCGGCCGTCGGCGGTGATGTCCATTT 14894 28 100.0 32 ............................ TTGCGATCGGCCGCCCGCAAACGGCGCTCGCC 14954 28 100.0 32 ............................ GCGGTCATGGCGGACGCCGTGCAGATCACCAA 15014 28 100.0 32 ............................ TCCTTCATTTCGGCGGCGGTCTTGCCGGTGAA 15074 28 100.0 32 ............................ GGTAACCGAGCCAGCCGCCACCGTCGCCGAAT 15134 28 100.0 32 ............................ TTGATGCCCAGGGTGTTGTCGATGTAGGTGGC 15194 28 100.0 32 ............................ AAGGAGCAACTGGCCGAGCTTGAGCGCTTGGC 15254 28 100.0 32 ............................ GAAAACCGCGACCGCGAGAACATGCATGTCTA 15314 28 100.0 32 ............................ TGCCCTCCTCGGAAGCGTACTACACACCTTCC 15374 28 100.0 32 ............................ AGGGAGGCCAGGGACGCGCGCTTATTCGTGTT 15434 28 100.0 32 ............................ TTACGCGCAAGTCTGGGGCAAGTCGGGAGAAC 15494 28 100.0 32 ............................ TTTGACGGACGGCCATTCCGCGGCCTTGTTGA 15554 28 100.0 32 ............................ ATCTGCGGCAGGCCGCGCAGTGCCTTGGTGTG 15614 28 100.0 32 ............................ TGGTGGCGCAGCATGGTGTTGCAGCGCTCGAC 15674 28 100.0 32 ............................ TCGCCGGCCGTCCTATAGTCGTACTGAGCAAC 15734 28 100.0 32 ............................ AGCAGATACATTTGCTCAGCTGCGCGCGGCCA 15794 28 100.0 32 ............................ TGCTTCGGATCGTGCGGCGGGAGCGGCAGCTC 15854 28 100.0 32 ............................ TGGCAATGCGGCGCTGCCGTACCAGTCCGTGC 15914 28 100.0 32 ............................ TCGCCCGGGGCGAAAGTCACGGTGTGCACGTC 15974 28 100.0 32 ............................ TGCCTCGCGGCCTGACGCTGCCGAAGCCGGAT 16034 28 100.0 32 ............................ ATGCGGACGCTGCGCGTCCTTGCGTGTCAAGG 16094 28 100.0 32 ............................ GTGATGCGCGAGATTTACAAGCGCCTCGGCCC 16154 28 100.0 32 ............................ AGCACAGCCCCCTGCGTGCCCAGTAGTTCCGC 16214 28 100.0 32 ............................ ATTCTAACAGTGCAACGTGTCGGCGACATTGC 16274 28 100.0 32 ............................ AATCAATATTAACTAGCAAAGGCTGCTCCATG 16334 28 100.0 32 ............................ GGTCTCGGCCGCAACACACTGTCCGATATGAT 16394 28 100.0 32 ............................ TCGTCTGCTTGGCAGCGCGCCCCAACCGTTTT 16454 28 100.0 32 ............................ TACAGAAACAAGCGGATCGCCGCTGATCCGGG 16514 28 100.0 32 ............................ TTTGACAGGGGTAGCAAGTGAGTTGTGCCTTT 16574 28 96.4 32 ........T................... GCCTACGTGCATTTGACCCAGCCGCTGCGCAT 16634 28 100.0 32 ............................ ACATAGGGCAGAAAGGCAGTACCAATGAGCAA 16694 28 100.0 32 ............................ CTCCAGGCCCTCCGGGAGATGTTGCAAACATC 16754 28 100.0 32 ............................ TCCACCAGCGCCCGCGAAAAGTGCCAGCTCAT 16814 28 100.0 32 ............................ ACAGCGGCGGCGCTGATCTTCGCACCGAAACA 16874 28 100.0 32 ............................ TTCCAGCTGTACCCCATCACGTCCATATTGAA 16934 28 100.0 32 ............................ ACATGGAGCGCGTCAGCCTGAGAGTGTGGGCA 16994 28 100.0 32 ............................ TATTCAGTCAGTTCGCCCAGCTCGGGCGACGG 17054 28 100.0 32 ............................ CTCCGGGTTCGCGCAGAGGATGGGCGAGAGTT 17114 28 100.0 32 ............................ ACGACGCTCTGGCCTGCGCCAGCCTTTTTGCG 17174 28 100.0 32 ............................ AACTTGCCATCGCCTTTAGGTGTGTACTCTGT 17234 28 100.0 32 ............................ AGGCACGGTGACACGCACCTGGTCGATTTCGT 17294 28 100.0 32 ............................ CGTAGCGAGTGGCTGCCGGACCCTGGCGCGGA 17354 28 100.0 32 ............................ TCAGGGAGCCACCCTGCAATCGGTCAGGCCCA 17414 28 100.0 32 ............................ AATGCGCATTCAAAAAACAATCAACATCGGCG 17474 28 100.0 32 ............................ TCCTTGGATGCGTCAGACTTCACCCAGGTAGA 17534 28 100.0 32 ............................ AAAGAGATCGGCGCGCAGCTGGCCACCTTCCT 17594 28 100.0 32 ............................ CGCTTCGCTGGCTTCCTCGATTGGATTGCCTG 17654 28 100.0 32 ............................ GACTTGTCGATGAAACGACCGAGGGCGGTCTT 17714 28 100.0 32 ............................ ACTCCACGCGCTGCCAGATGTTCCCGCGGTCA 17774 28 89.3 0 .....................AA.C... | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAGGTGCCGGTGCCCAGCAGGATGCAACTAGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCATTGACCAGCACCCGGCAGTGCTGCAGATAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCTGACATGGCGATACCTTCGGGATGGAACGCGACAGCGCATCTTGCCATGAGCATGAAAAGTGGGACAGCCGGCGCGGACTACCCTTTTTTTCTGCCCCCTGGAGCCCACATTTAAAAACAATGACTTAGCGATAAGCTGAAAATTTGGGTCAAAGCCGAAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : AACGCCCCTGATGGGGCATTTTTCTTGATCAGCCGCCTGAACAAAGCCACTCCCAAAGGATAAAATATGCCAATAAAATCACCAAAGGAGTGGCCGTGGAATACATTGACTACGTCAATCAGGCATCCAAGCTGATCTCGCCCCTCACCGCCATCTTCCTGGGCGCGCTGCCGGTATTGGCCATTCTGTTCGTGGTGCTGCGCACTCAGTCCTACCACATTCCCTTGACGCTGCTATGGCGCATTGTGGGCGGCAAGAAGAAGATCAACGACAAACTGCTGGCGGACTTTCTGGATGAAAGAAACGCCATCATGAAGTTCCGTACCCTGACCGGGCTTAAGATCCGCACCAAGCAAGAGATGCTGGCGCTGATCCAATGGGTGGCCAAGCACAATGAGGATATTGATGACGTCAAACGCTGCGGGCATTACTTCAAGCTCAGCGAGCCCGGCAATATCACCTCGCCCAACAGACTCGGCAGCATCGCCCTACTGCTAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32094-34105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHW010000014.1 Chromobacterium aquaticum strain DSM 19852 contig_0000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 32094 28 100.0 32 ............................ TCTGCGAACTTCTGGACCTTTACCGGGATCGC 32154 28 100.0 32 ............................ TTACTGGAGTTGATCACCATGAGCCTGCAAGT 32214 28 100.0 32 ............................ CTTCTCGGTAACGGCGCTTCTGCGCTGATTGT 32274 28 100.0 32 ............................ TGTTGCGGCTGACGAAGTCGAAGCTGTAGTGA 32334 28 100.0 32 ............................ AAGGCATGGCTGGCCATGTCGGCGGAAATGTC 32394 28 100.0 32 ............................ TGGGGGCCGGATGGCTCCGACGAGGTGCCGAT 32454 28 100.0 32 ............................ TGGGGCAAGACCTGCTGCGCAAAGTGTTTGAC 32514 28 100.0 32 ............................ AGCCAGAAGAACGACAATATACTTGGCCCCAA 32574 28 100.0 32 ............................ CAGGAGCTTCGCAAAACGATATCCGCGATGGC 32634 28 100.0 32 ............................ CTGCTAAAGTGTCGTTGATTTGCAACAGTCAT 32694 28 100.0 32 ............................ TGGAGCGCAGTGGCCAGCGGCCGCTTTTTCGA 32754 28 100.0 32 ............................ TCGACGGGTGGCGGATTTCATGGGACCGTCAT 32814 28 100.0 32 ............................ TTGGATCAGCTTGATGCCGTTGTTGCTGGTCT 32874 28 100.0 32 ............................ TTGCCTGCCAGTTGATCGTGAACTTGCACGAG 32934 28 100.0 32 ............................ ACCCCGCCGCGCATGGAGTTCACCGCGTTGAC 32994 28 100.0 32 ............................ TGGAAAACGGCTGTTACCACGTGCGCGCCTAC 33054 28 100.0 32 ............................ ATACGGCATAGCGAGTTCTTTTCTTAGCGTTA 33114 28 100.0 33 ............................ ATCAGGGCCGCGACCGCCATGAAGACGAAGCAT 33175 28 100.0 32 ............................ ATCCCGCCAGCTAGTAGAGCAATTGAGTTCAC 33235 28 100.0 32 ............................ CGTGACTCGCGTTCCGTGTACACAACGTAATA 33295 28 100.0 32 ............................ TGTTGAGAAAGAGGCTGACGAAGATTTCGAAT 33355 28 100.0 32 ............................ GGCACGGTTAAGGAGTGCTTGGAGGATGTAGT 33415 28 100.0 32 ............................ AGGGACTCGCCGATGTTCTGATGAACCCTCTG 33475 28 100.0 32 ............................ CAGCAGACCGGCGCCATCCAGTGGGGTCAGGC 33535 28 100.0 32 ............................ TGTTGCGGCATGGCCTCTTCCACCATCCAGCT 33595 28 100.0 32 ............................ TGACACGCCGAAGGAGAGTCCGGCGTGAAAAT 33655 28 100.0 32 ............................ TTGCAGCTCGGCAGCCGGTAATAGGCGTCAGG 33715 28 100.0 32 ............................ AAAACCCTGGCAAAGTTGGCCAACCGAATTGC 33775 28 100.0 32 ............................ CATGCGATCGAGTCCATGCTGACACTGATATC 33835 28 100.0 32 ............................ CGACAAATAAAGAAGTTCAGCAAGCAGGCGAT 33895 28 100.0 32 ............................ GAGAAATCCTCTGCGGTTGCCTGCGGCGCGGT 33955 28 100.0 32 ............................ TTGATGTGAACATCTTGTCCGATGTCGCCCAG 34015 28 92.9 35 ..............A..........G.. GGATCTGCAGCAGCAGCGGCGGCGACGCCCGGATC 34078 28 85.7 0 ..G.........G.AA............ | ========== ====== ====== ====== ============================ =================================== ================== 34 28 99.4 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : CACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAGCGCCGCCGGCTGGTACGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGTCTGACCCTCCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGTTACCAGCTGCACATCGAGCAGCGCCCAGCCCCGGCCACCCACAGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTGCTCCCCGCCGCCAAGCCTGTTAAATCAAGGACTTGGCGCGGGGTGGGATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCGCCACTGCCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : AATCCACAACTTGATCTGGTGTCCGAAAGGCGGCTTCACTGCCGGACAGGCAGCTCCCCACAACAAAATCAATGCTATATTAGGCATCTAAATTGATTTTAATTAGGGAGAAGTTATGGACTTGGTACTTGCCGATGTGGCTGTCAGCGTCACCGAGCTCAAACGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCGGAGGCCTATCTTGTTCCTGCCGCCCAATACGAACGCATGATGAACCTGCTTGAAGACATCGAGGACGCAAAGTTGGTGCTGGAACGTCGCCAGCAACCCACCGTCAAGGTGGACCTGGATGAGCTATGAAATTGTTTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTTCCGCCAAGCTGCATGGCCTGGAAGGCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //