Array 1 25721-28390 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINN01000019.1 Pseudomonas aeruginosa strain FFUP_PS_65 Contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25721 28 100.0 33 ............................ TGGGGACCGCCCAGCCGAAGCCGGCTGCTCCGG 25782 28 100.0 32 ............................ GAGGGCGATCTCGACTTCTCGTCGATGATCAG 25842 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 25902 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 25963 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 26023 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 26083 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 26143 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 26203 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 26263 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 26323 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 26383 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 26443 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 26503 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 26563 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 26623 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 26683 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 26743 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 26803 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 26863 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 26923 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 26983 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 27043 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 27103 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 27163 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 27223 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 27283 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 27343 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 27403 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 27463 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 27523 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 27583 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 27643 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 27703 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 27763 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 27823 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 27883 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 27943 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 28003 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 28063 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 28123 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 28183 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 28243 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 28303 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 28363 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 38623-36915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINN01000019.1 Pseudomonas aeruginosa strain FFUP_PS_65 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38622 28 100.0 32 ............................ TCCAGTTGCGGGGCTCGGTAGAGCTTGTCCTG 38562 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGTA 38502 28 100.0 32 ............................ TCACCATCATGCTTGTACGTGCCGCCGATCTC 38442 28 100.0 32 ............................ GGCTACCAATCGGCAGCGTCGAACACCGGCGA 38382 28 100.0 32 ............................ CTCTTCGCGGATCTTGGCCAGGAACGGGTCAA 38322 28 100.0 32 ............................ AAAACGCAGAGACCCGATGGCGTAATCTTCCG 38262 28 100.0 32 ............................ TGGCTGGAGCGGAGCGTCGGCGATAGCGCGCA 38202 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 38142 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 38082 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 38022 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37962 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37902 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37842 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37782 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37722 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37662 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37602 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37542 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37482 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37422 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37362 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37302 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37242 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37182 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37122 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37062 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37002 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 36942 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //