Array 1 201748-199641 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPR01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 127 NODE_1_length_740264_cov_28.2351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201747 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 201686 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 201625 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 201564 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 201502 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 201441 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 201380 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 201319 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 201258 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 201197 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 201136 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 201075 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 201014 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 200953 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 200892 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 200831 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 200769 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 200708 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 200646 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 200585 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 200524 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 200463 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 200402 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 200341 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 200280 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 200219 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 200158 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 200097 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 200036 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 199975 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 199914 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 199853 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 199792 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 199731 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 199670 29 89.7 0 A...........TC............... | A [199643] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 219132-218006 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPR01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 127 NODE_1_length_740264_cov_28.2351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219131 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 219070 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 219009 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 218948 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 218887 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 218826 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 218765 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 218704 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 218643 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 218582 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 218521 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 218460 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 218399 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 218338 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 218277 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 218216 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 218155 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 218094 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 218033 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //