Array 1 9063-9316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQK01000117.1 Leptospira interrogans strain 56143 Contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 9063 38 100.0 35 ...................................... TAAATCGGAAGCATGTTGCGACTCGATTCCGTGGG 9136 38 100.0 34 ...................................... ATCGTTATCCGCCAAGGCGTTATCAGTTCTACAA 9208 38 100.0 33 ...................................... ATTCGATGCAACCTTTCCAGACCGATGTCACTT 9279 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 34 TCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACT # Left flank : GAAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGC # Right flank : GTCCAGTTGCGAGGAGTTAGGAGCCATAACCTTACCACACAAGTTGAAGAGGGCTTTAGAATGAAAAGGATTAAAAACGCATATTTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2017-1479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQK01000220.1 Leptospira interrogans strain 56143 Contig220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2016 36 100.0 37 .................................... ACGACGTAATCGATATTACCCCTGGAATGGCGCGGGA 1943 36 100.0 36 .................................... CCACGTCGTAAAATACGTTGTGCCATTATAGTTTGT 1871 36 100.0 35 .................................... CAGAGTCTCGATAAAGTTTTTGTGGCACTTGCATC 1800 36 100.0 34 .................................... TCCTGCAATCCAGTTTCATTCCGTGGTAGTCCGA 1730 36 100.0 35 .................................... TATACGGTTATGGGAACGCTCGCAGGTTGGACGAT 1659 36 100.0 36 .................................... AGCAAACAAACCCAAAAGTCAGAAACAAGATTACTT 1587 36 100.0 37 .................................... AAATATTATTGTGACAACAAAAGACATTTAGTATGTG 1514 35 94.4 0 ..............................T..-.. | A [1487] ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 99.3 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : CGGGAACTAAGTTTTACAGAGAATTTTGTCGTAATTCCGACGATAGATCTTGAAATCCAAATACTTGTGGGTAAGGTTATGGTTAGGAGCGAGTGCATAGGG # Right flank : GAGGAGAAGATCTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTACTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGGTAGGCGGTTTAGAATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAGCTACCTACTTTTCCGAAAAACAGTATTTTGTTCAAATAAATGTGGGAACTCCCAGTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGTCGGTAGGCGTTGAGCACGTTAGATTTAAGTCTCTTGGGGGTTGAACTTCAATCCTGAATATAACTTTGATGCCGTTAGGCGTTGAGCACCTTCAAAACACGATGCTCCCCGGAGTCGCTGGAACCTGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //