Array 1 77431-78313 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAR01000002.1 Apilactobacillus timberlakei strain HV_27 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77431 29 100.0 32 ............................. TTCCGTGGGGTCAATATGCACCTGCAAACTCA 77492 29 96.6 32 C............................ TAATTTGTTCATCACTTAATAATTTACCGATA 77553 29 100.0 32 ............................. CTAGAAAATGTGGAGACTTTCTTTTGTACTTC 77614 29 96.6 32 ..................A.......... TTAATTCATTATTCATGTGTATTGCCTCCTAC 77675 29 100.0 32 ............................. TTAGCTGCAATACTATTTATATTAGGATTTAT 77736 29 100.0 32 ............................. CCTAAATCAATCATCAAATTTTTAGAAAAAAT 77797 29 100.0 32 ............................. CAAGGCAACCTAGTTGATGCAATTAAGAGTGA 77858 29 100.0 32 ............................. TGATGTTTATAGTAGGCTTGTACTCAACTTTA 77919 29 100.0 32 ............................. CCTTATTATCCGAAGTCGTTAACTTAAACCTT 77980 29 100.0 32 ............................. TTGCACTAGCAGAAGCAATCCCAATACTTATA 78041 29 100.0 32 ............................. TGATTATTTGAATTTGATTGTTTGCTAGCATC 78102 29 100.0 32 ............................. CTTAAGTCTTTTCCTAAGCTTCCAACTGTATT 78163 29 100.0 32 ............................. CATATCGTACAGACGATGATCAATATACTTTA 78224 29 100.0 32 ............................. AAAAATGAAACTATTACTAAAACTTATCGAGA 78285 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 AGAATCACTCCCGCGTATGCGGGATAAAC # Left flank : CTAACTTAATTAAAAGTTTGGACCGGAATACCCTGAATAGAGCTATCCGTGAACGCATAATAGCGTGATAACTATTTTGGTCTATATTACTGGAACAGCTTAAATAAAAGAAAAATAAATAATAAAAAAGATAAAAATCTAAAAAGCTATAATGATCATAATAAGATAAAAGACTTGCTGATAAAGCAAGTCTTTTTATTTATCTTTCTTTTTGTTGGAATAATGAATACCTACGCAGCAACCAATAAAGATAACGATAAGTAATGTATATTGACCAACCGTATCCCAATCGACATCATCACCACCCAATAGGTTAAATAAGGCAATACAACATAAAATAAACAAGATAAATTTCCACATTCTAAATATTAAACCAATGCTATTGCCAAATAGTGATAGTAATTTTAAAAAGTCCATATGTATCCTCCGAGATTAATCTACTAATAATTATATTAGAATCAGCTTTTATTGGCAAAGTAAATATAATTATTTTTATGTAT # Right flank : CACTAAAAGAATGCTGAAATATCAAGCTTTTCTTTTTAACTTTCTACTAAATCCATTCACTTTCATTGCCAGTTTACACATTAATTTAGAATCCAATAAAGCTCGATGTGGAACCGTAGTATCAATTCCATAATCAAGCAAAGCAGTTTCTAATTTATAATTAGGTAAAAACATTTTTTCTTTTTTCACTAATGGTAAAAGATCAATATAATTATTCGTCAATGGTTTCAAATTATGTTTTTCTAAATTGTAATTCAAAAATTCAATGTCGAAATTAATATTATAACCAATTAAAATTTTATTTGAAATAAAAGATTGAAATTTTTCTAGTGCTGATGATAAATCTATTCCTTTATTTTCTAACATATCATTATCTATATTAGTAAGATTTATAATTTCTTCAGGCAAATTATATTTACTATTTATCAAATAATTAAATGATTTTTTATCACCATTAGACAAACTTAAAGCCCCAATTTCAATTATATGATTAGTTCTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGTATGCGGGATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 88755-89151 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAR01000002.1 Apilactobacillus timberlakei strain HV_27 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88755 29 96.6 32 ...G......................... CCAGCAATATAGAGGGATGTTTTTTGCTAATA 88816 29 100.0 32 ............................. TTAAAGTTTTTAAGGGGAATAGTATTTAACTC 88877 29 96.6 32 G............................ ATAAAATACGTTCCAACTTTTATAGATAATAA 88938 29 100.0 32 ............................. TCGTTTTCTACAATACCTTGGGCAGTAGAATC 88999 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89061 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : AACAGACTCATATCCTCCATTTGTAGAAATTACGCCATACCAACCATTTTTTAGATGTTTATATTTATATTTTATAGTTAAACCCTTGCCATTATTCTGATTAAAATATGCATAGTTTTTTCTGATTCTATAAACAAAATTTTTACTAAAACCTTTTTTACCATACCAATTGTGTCTATATCTTAATGGAACAGAAATGACTTTAGACTTTGCATTAACATTATTAATGATAAATGATGAACCAAGTGTTAAAACAGAACAAATTGTTATGATAATTTCTAAAGCTATTTTTTTCATTAAATATCACCTTTCTAATTTTATTAATATAATTATACACTCTAGAATCATTAAAAAGATAAATAATAGTTAAATCCATAAAAAGGAGAACTTTATCTTGTTTTTTTATCTAGTTAATAATTATTATTTTTTATTAATATAAAAGCTAAACTAGTAAAGAAGATTTTGAGAATAAAGTTGTATAAATAATTATAAAAATATTT # Right flank : CACTAAAAGATTAGCGGCAAATCAACAATCCAGAATTGCAGATCAAGTATTTTCATTCACTTTTATTATGATAGCATATCCACAAATTAATTAATATAAAGTTATAAATGTATAAAAATTAATTTTGCATATATAATTAATTTTCTTATTTACACCCCACTCAAAAACCGCTATACTTATAAACATACAAAAATAAAACATAGAAAAAGAGCGTTGATCAATAATTACGACCAATAATTATTGACCAGCTAACAAAGTAATCGCACTTACTTGTTAACCTTTAACGCTCCTTAGTTATTATATAAGAGCTGAGGAGTAGTTGCAATATATCTAATACATATATGAGGGGACAAGTTTATTACTTGTGCCCTCTTTTTCTATCCCAAAGGATGGATAATAATGAACCAATTTATTAAATTTGATGTTGAACTACGTAAAGATGACCGTTTAAATAATGATACGCGCTTAGCTTATGCTTACTTATACGATCGGATGCATTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //