Array 1 488315-488852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071179.1 Listeria innocua strain LI47 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 488315 29 96.6 36 ..............A.............. GGCGTAGATTTATCCCATCGTCTAATTGTTCCATTC 488380 29 100.0 35 ............................. AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 488444 29 93.1 34 ..............A.T............ CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 488507 29 93.1 34 ..........T...A.............. GGAGATTTTAAAATCTGATCATAATAACTCACTT 488570 29 100.0 36 ............................. TAGGTTGATTTAAGACCAATGTTTGATGTTGCTTCA 488635 29 100.0 37 ............................. ACCAAGTGGTCTTGATACACATTTGTGCCTGTTGTTT 488701 29 96.6 37 .....................T....... AAAATAGCAATGCCACAAACGGAATACGACAGAATTA 488767 29 100.0 29 ............................. TATAGACCTTTTCGACATTCGTTGGTTTA 488825 28 75.9 0 ..........T.C.C.A......-A...G | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 95.0 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAAACTGTCGACCAGCAGTAGCGTAAAAATTCCGAAGACCGACAGGAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : GCTCAATTTATAATCTTTGCTCACATTTAAAAATTACAGTTTTAATTTACATCCCTTAAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2670548-2669655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071179.1 Listeria innocua strain LI47 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2670547 36 100.0 30 .................................... TACCTCTTTCTTTCTTCGCTTCAGCCTTAC 2670481 36 100.0 30 .................................... TGGATATTGAAGAAATAATCTTACCTAACA 2670415 36 100.0 30 .................................... TTCACATAAAGTAGAAGGAGCTACCGGAAA 2670349 36 100.0 30 .................................... TATCATTGTCAATGCGTATATCATGACCGT 2670283 36 100.0 30 .................................... TTCCGCATCGTCATTGTTATTTGTGGCGCT 2670217 36 100.0 30 .................................... CTCTCGCAGAGTTTGCGCGACTTGTTGACG 2670151 36 100.0 30 .................................... AGAGTTTTTTCGTGAATATACAGTATTAAA 2670085 36 100.0 30 .................................... TTGGTTTATTGAGCGCATTGAGGCTATACA 2670019 36 100.0 30 .................................... TTTATCCCCTCGCAATACCTCAGTACCTCG 2669953 36 100.0 30 .................................... TGTCGGTGTTTAACCTATTTTTAACGTTCT 2669887 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 2669821 36 97.2 30 ..........................T......... GCGGCGAAGGGAGGTTTGTGAATTGGCTTC 2669755 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 2669689 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAAAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //