Array 1 156513-154304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWX01000006.1 Salmonella enterica strain BCW_2865 NODE_6_length_262777_cov_4.36906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 156512 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 156451 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 156390 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 156329 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 156268 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 156207 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 156146 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 156085 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 156024 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 155963 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 155902 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 155841 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 155780 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 155719 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 155657 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 155596 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 155535 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 155473 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 155412 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 155351 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 155290 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 155229 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 155168 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 155106 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 155004 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 154943 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 154882 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 154821 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 154760 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 154699 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 154638 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 154577 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 154516 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 154455 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 154394 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 154333 29 96.6 0 ............T................ | A [154306] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174450-172774 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWX01000006.1 Salmonella enterica strain BCW_2865 NODE_6_length_262777_cov_4.36906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174449 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 174388 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 174327 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 174266 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 174205 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 174144 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 174083 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 174022 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 173961 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 173900 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 173839 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 173778 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 173717 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 173656 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 173595 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 173534 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 173473 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 173412 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 173351 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 173290 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 173229 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 173167 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 173106 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 173045 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 172984 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 172923 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 172862 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 172801 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //