Array 1 48695-49262 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MIRJ01000030.1 Vibrio parahaemolyticus strain GCSL_R60 CFSAN011123_contig0029, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     48695	    28	 100.0	    32	............................	ACCATTCTCCGGAGCAATCGTTCGGTACTAAA	
     48755	    28	 100.0	    32	............................	AGGAACAAGTTCAGGCAGCGCAACAGCAATCA	
     48815	    28	 100.0	    32	............................	TTGGTGGTTATTCCTATCTGCCACTTCCTGTA	
     48875	    28	 100.0	    32	............................	AAATTGTTATTCGGAAAGGGGAATTTACTACG	
     48935	    28	 100.0	    32	............................	TGATTTCGTTGCTGATTTCCACTTCGAAAACT	
     48995	    28	 100.0	    32	............................	CGCTGGCGGTTTTCCCTTCTCCTTTTGGCGTC	
     49055	    28	 100.0	    32	............................	ATATAAAACTGAATCATGAGCCATTCCCAAGC	
     49115	    28	 100.0	    32	............................	TGACTTAGTCGTATTGGTTGGTCATGACTTGA	
     49175	    28	 100.0	    32	............................	TGTCGGATGACAAAAGAAAGGTTCAGCGCAGC	
     49235	    28	  92.9	     0	..............T...........G.	|                               	
==========	======	======	======	============================	================================	==================
        10	    28	  99.3	    32	GTTAACTGCCACACAGGCAGCTTAGAAA	                                	       

# Left flank :   AACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAACTGGAAAAGACTAAGCCTACCTCGCTCTGTTTATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCGCCTGATAAGAGCAGTAGATTTCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCATTTCGATTGTTATGGACTGAATGCCAAACTCAATCAACAAGACGGTCTTGGGACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATGA
# Right flank :  AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTGAAATTTATATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCCTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTATGAAAATCCATAATTATAATTGTTAATATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAGTAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTAACTGCCACACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//