Array 1 1751219-1755044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGCX010000001.1 Bifidobacterium animalis subsp. lactis strain BS 05 NODE_1_length_2061480_cov_41.5557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1751219 29 100.0 33 ............................. CGCATCGTGGGCATTCTCGCGGACCTGCAGACA 1751281 29 100.0 33 ............................. AAGCGCTCGAGCTCGCTGACCACCATCATGTCG 1751343 29 100.0 32 ............................. CATCATGGCGGATCCAACCCCCAAGATCACCG 1751404 29 100.0 33 ............................. ATATCATTCGCAGATATACTACTGGATACAGGC 1751466 29 100.0 32 ............................. AGATCATAGCCACGCGCGGTCATGCCGAGCGC 1751527 29 100.0 32 ............................. GGGCCATTATCCGCGTAATGCGATGGGTGGTT 1751588 29 100.0 32 ............................. AGCAGGACGAGCGCGCGACGCTGCACGCCCAG 1751649 29 100.0 32 ............................. TGATTGTAATACGGCATGATCTCGGCCATCGT 1751710 29 100.0 32 ............................. CACCAACTACAACCTGTCCCAGTTCGCGGACG 1751771 29 100.0 32 ............................. CCGCAATGAAACTGCTACGGCAAATCGGAGAA 1751832 29 100.0 32 ............................. CGCTGACCGCATAATCCCCGCTTTCGTCTATG 1751893 29 100.0 32 ............................. TCACTTCAATAATCGAAAACGTTTGTGAAATA 1751954 29 100.0 32 ............................. ACGTCGCTTGGCACGCTCGCCGTGTCCAAGGA 1752015 29 100.0 32 ............................. GCGTCGTCGCCCAATGTGACGCTGCCGCGTGT 1752076 29 100.0 32 ............................. TTCTGCGTCGCCAAGAACTGCAAGTCTTCGGC 1752137 29 100.0 32 ............................. GCGTATGCCCAGGCCAATGAGTCGGCGGCGTT 1752198 29 100.0 33 ............................. GCAGCGCCCACTCGTCGATCTGCGTCTCCCACG 1752260 29 100.0 32 ............................. TCGTACGGCTGTTCGACCACGAGATAATTGTA 1752321 29 100.0 32 ............................. TGCGTCTTATCAATGTCGCTGCTGGCGGTGAG 1752382 29 100.0 32 ............................. TGCCCGAGGCGGCCACCGGCACGGTATGGTCC 1752443 29 100.0 32 ............................. GGGCCATTATCCGCGTAATGCGATGGGTGATT 1752504 29 100.0 32 ............................. AAAGTAAGCGAGGGAATAACATACATCAAAAA 1752565 29 100.0 32 ............................. TGAGCGTGGACTGGGCGGATTATTTGTCCGGC 1752626 29 100.0 32 ............................. GCGTCCAGTGCGCGACGGAACATGCCGACGAA 1752687 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1752748 29 100.0 32 ............................. GCCTCGCATGGTGGGAGGGCAAGCCGGTCGAA 1752809 29 100.0 32 ............................. ATTTGGAACTTTTTCAAATGCTTGTATCGACT 1752870 29 100.0 32 ............................. GTGTTCGAGAAGGGGCCTGCGGTCTCGGTCAT 1752931 29 100.0 32 ............................. TGACCGGGTTCGCCGAACTGCCGCACACGCCG 1752992 29 100.0 33 ............................. GAGACAGACACCGAACTGATACTCCCAGTGGGC 1753054 29 100.0 32 ............................. GGCACCCCGGCCGGTGCGAACAGCATGACCGA 1753115 29 100.0 32 ............................. GCCAACACCTCAAAGAATACGTCATCGCACAC 1753176 29 100.0 32 ............................. AACATTGGAGAGAAGCCAAGCAAGCCGAAACA 1753237 29 100.0 31 ............................. ACGGCCACACGCATCGATTTCACGCGTGGGC A [1753265] 1753298 29 100.0 32 ............................. GCCAGCATGGTCGCCCAGTCCGTGCCATGCCC 1753359 29 100.0 32 ............................. ATCTTCTTGACGTCCCCAGTACCGGCATAATC 1753420 29 100.0 34 ............................. GCGTTGCCTTCGGCTGCGGTGATGTAGTAGTGCG 1753483 29 100.0 32 ............................. TGGTCGGAGAGGATCTGGTCGGCGTCGGCGGC 1753544 29 100.0 32 ............................. TGCCAGCCCGTCAAACGAAACGGCCGATTCAA 1753605 29 100.0 32 ............................. GTGATCATCTCGTTCCAGATCTGGTTCTTCAC 1753666 29 100.0 33 ............................. TCCACATGTGCGCCTCCTCGTGGTGCGGTCGCG 1753728 29 100.0 32 ............................. TCGGCCTGCGAGTTCGCCGGCGCGCTCTGGGA 1753789 29 100.0 32 ............................. GTCGACACCACCGGAAGCCAGCTGACCATGCT 1753850 29 100.0 32 ............................. AACGGGTTGACCATAGGCGACCTGACGAACAC 1753911 29 96.6 35 ............................A ACCAAACAAAACCAAACAAAACAACAAACAACAAA 1753975 29 100.0 32 ............................. AATTTTGGTAAATTGGTTTTGGTTATCCCCTA 1754036 29 100.0 32 ............................. AGTTGACGTTAACACCGATGAGGCCAACCAGA 1754097 29 100.0 32 ............................. GCCGCTGTGATTGCCGCGCTTCGCGATGCGTC 1754158 29 100.0 32 ............................. AGCATGTCGTAGCTGACCGGCTGAACCTGTCC 1754219 29 100.0 32 ............................. GTGTTGCCGATGGCGTATTGCGCATAGTCCTC 1754280 29 100.0 33 ............................. TATTGGGACAATCAGGAGGCACCGACATGGCAG 1754342 29 100.0 32 ............................. GCGATGCTGCCCATCAAGTTCAAGACCGCGTG 1754403 29 100.0 32 ............................. CGGCCGCATCCGGCATGCAGCCGATCCCGACT 1754464 29 100.0 33 ............................. AAGGCAAACCAATTACTGGGACAATCATCAGGA 1754526 29 100.0 32 ............................. GTGGCGGTGAAACGGTCGCCTTCCTTCGGCTC 1754587 29 93.1 32 ..........C.................T TGCAGGTGTGATGGATTGACGCATAGGCTGTT 1754648 29 96.6 32 ..........C.................. GCCGAACCGCCCTTGCGGGTCTGCATGCTTTG 1754709 29 96.6 32 ..........C.................. TCAAGATTGGCCCGATCACCACCACCCACATA 1754770 29 96.6 32 ..........C.................. AGGTTCGTGTTGCCGTCCGGATTGTCCTTGAT 1754831 29 96.6 32 ..........C.................. TGTCATTGGGCAAGGGGCCGGACGGCAAGTAC 1754892 29 96.6 33 ..........C.................. GGGTGCGCAGCATCGTCGCCGTCATCGTCACCA 1754954 29 96.6 33 ..........C.................. GGGTGCGCAGCATCGTCGCCGTCATCGTCACCA 1755016 29 96.6 0 ..........C.................. | ========== ====== ====== ====== ============================= =================================== ================== 63 29 99.5 32 GTGTTCCCCGTAAGCGCGGGGATGATCCC # Left flank : CACTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGGTATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : CGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATAGTGTTCCCCGCAAGCGCGGGGATGATCCCCAGCTCGCCCGCATGGAGCAGTTCAGGACCTAGTGTTCCCCGCAAGCGCGGGGATGATCCCAGCTTGTAGTGCGAGACGTGGTCGGCGTCCGTGTGTTCCCCGCAAGCGCGGGGATGATCCCTCACCGGCGGCACCCCGCCTGCCCAAGCACAGGGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1755325-1756942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGCX010000001.1 Bifidobacterium animalis subsp. lactis strain BS 05 NODE_1_length_2061480_cov_41.5557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1755325 29 100.0 32 ............................. CAGCTCGCCCGCATGGAGCAGTTCAGGACCTA 1755386 29 100.0 32 ............................. AGCTTGTAGTGCGAGACGTGGTCGGCGTCCGT 1755447 29 100.0 33 ............................. TCACCGGCGGCACCCCGCCTGCCCAAGCACAGG 1755509 29 100.0 32 ............................. GGGCCGTGCACCTCGTATACGGGATATGAGCG 1755570 29 100.0 32 ............................. GGAGGTGCATGAATTGAACGCAGAATAACGAC 1755631 29 100.0 32 ............................. GTGTACCGCCAGTCGTATCTCAGATGCCGCCA 1755692 29 100.0 32 ............................. GCCTCGACCGCATTGGCCAACGACAGCGCCAC 1755753 29 100.0 32 ............................. TACCATGACCCCATCACGCTCGGCATGATGCA 1755814 29 100.0 33 ............................. AAGGCCGACATCGCCCTCACCCCCGGTGTCTAC 1755876 29 100.0 32 ............................. ACCGACCCGAACCTGTGGGCACCCGGCAAGAC 1755937 29 100.0 32 ............................. AGATCCTTGGACAGGTTCGGGGTCTGGTTCGG 1755998 29 100.0 32 ............................. GCGATGTGGAACATGGTCATAGGTGCGCGCGG 1756059 29 100.0 32 ............................. GCAGACATCCGGTCGAAAAGAATCCCGGAAGT 1756120 29 100.0 32 ............................. CTGACAGCGGCGGACCTCAGGGACCAACTCCA 1756181 29 100.0 32 ............................. GTGGAAGGAACATATGAACAGCATCCGAACCT 1756242 29 100.0 32 ............................. TGCACAACGAAACCAACACCGAACTGATACTT 1756303 29 100.0 32 ............................. ACCCACGGCGGCAGTGACGATAACGGATACTG 1756364 29 100.0 32 ............................. GCTGGGTGACGAGCGACGTGCTGCCGTCCATC 1756425 29 100.0 32 ............................. AGGAGCGTGACCGTGTACTTGCCGTCATCACC 1756486 29 93.1 32 ........T.................T.. TACACCGAGATAACGCAGGCCGCCGGCAATTT 1756547 29 93.1 32 ...........G....T............ CCGGCCGCCCCGGAGGTGGCGCGGAAGATACG 1756608 29 93.1 32 ......T.........T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 1756669 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 1756730 29 96.6 32 ................T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 1756791 29 89.7 32 .......T..T...............T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 1756852 29 89.7 32 A......G......T.............. CAGGCCGGGTGCCTCCATCCACTGCAAAACGG A [1756858] 1756914 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.7 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CTTGATGTGTTCCCCGCAAGCGCGGGGATGATCCCTGTCATTGGGCAAGGGGCCGGACGGCAAGTACGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGTGCGCAGCATCGTCGCCGTCATCGTCACCAGTGTTCCCCGCAAGCGCGGGGATGATCCCGGGTGCGCAGCATCGTCGCCGTCATCGTCACCAGTGTTCCCCGCAAGCGCGGGGATGATCCCGGTGAGCTGTGAGCCCGAGGAGGATTGACCGTCATGTCCGACCTGTTCATGATCATCATTGCCATTGTCTCTCTCATCGCAGCCCCTGTTGGTATCGTGATTGCCGTTCACCTCATCACCGCCGTGGTGTCGTCTGAATTGAAATCCCAGCGCGGTGAACATCCGGATACCTATCGCACGGTCATGTGGTGTGTCATCTGGGTCGCATCCGCCGTCGTCATCGCCGTCGCCGTCGGCATTGCCTCCACCCTGTGAACCTGTCCGTCCCTATACGGCAATA # Right flank : CTGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGACTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTACTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCAGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCAAGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAATGCTCTGTACTATCTAGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //