Array 1 98711-98916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLPK01000002.1 Escherichia coli strain MOD1-EC5442 MOD1-EC5442_2_length_165163_cov_48.7432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98711 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 98771 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG 98831 28 96.4 32 ..................T......... TTCGTACTTAACGAACTGTTGCTCCTCTGCTG 98891 26 82.1 0 ........T..A........-A..-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTATGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTAATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTGGGAGGTGAAGGTAATTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGCCAGCAGGAAAATGAGATGATTTTGCTTTATTAACAACGAGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAGCTCGTACTTTCGTACGCGCTTTTCTTTAAATATGACGGTGAGGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGCTGTCGAACCCCGGTCGGGGCTTTTCATCCCCCCTGGAGTGCAATATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 330-899 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLPK01000100.1 Escherichia coli strain MOD1-EC5442 MOD1-EC5442_100_length_12160_cov_3.91698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 330 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 390 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 450 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 510 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 570 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 630 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 690 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 750 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 810 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 870 28 85.7 0 ....................A...C.CT | T,C [890,894] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAG # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9957-12026 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLPK01000100.1 Escherichia coli strain MOD1-EC5442 MOD1-EC5442_100_length_12160_cov_3.91698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9957 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 10017 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 10077 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 10137 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 10197 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 10257 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 10317 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 10377 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 10437 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 10497 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 10558 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 10618 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 10678 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 10738 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 10798 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 10858 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 10918 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 10978 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 11038 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 11098 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 11158 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 11218 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 11278 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 11338 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 11398 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 11458 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 11518 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 11578 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 11638 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 11699 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 11759 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 11819 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 11879 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 11939 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 11999 27 92.9 0 .......................-C... | T [12019] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7077-6194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLPK01000064.1 Escherichia coli strain MOD1-EC5442 MOD1-EC5442_64_length_23597_cov_51.9748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7076 29 100.0 32 ............................. CTCAGGCAAGGGCGGTGTAGGCAAATCGTCCA 7015 29 100.0 32 ............................. TTCTGCCGTCCAGATCTCCGGCTCAGACAATG 6954 29 100.0 32 ............................. TCGATCCGCTGGCGGTGGGCGCAAACCAAACC 6893 29 100.0 32 ............................. TTTATCGGGGAGCCTTGTTATCTCGGGATTGA 6832 29 100.0 32 ............................. AAATCGGCGCGGAGCATTTACGCCCGGAGTTG 6771 29 100.0 32 ............................. CCGTAGTTGCTGTGCCTGATGCCGATATTTTC 6710 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 6649 29 100.0 32 ............................. ACTGCTGCTTATTTGCGGCAGATTGCGCTGTG 6588 29 100.0 32 ............................. TATGATCAGAATCAGGGATACAGAGAGGGTAA 6527 29 100.0 32 ............................. TCTATGGCGGTAATAATTCGGTCGGCGTAAAA 6466 29 100.0 33 ............................. AGCCTCGGCACACTCGCGTACTGATTCGCCCAC 6404 29 100.0 32 ............................. AAAACCCTAAAAATGATTTGCTGGATTCAGTT 6343 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 6282 29 93.1 32 .....A.......C............... TATAACCCGCCGTCTATTTCTCGTGTTATTTC 6221 28 82.8 0 ......T.....TC...........-..A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.4 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTATCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTACGTTCATGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATTACATCAGTATGTTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGTTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //