Array 1 571-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000175.1 Leptospira noguchii strain 56190 Contig175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 571 37 100.0 38 ..................................... CTAATACTATATAAATTGTTTACCGTAGAGTGTTAACG 646 37 100.0 34 ..................................... TCTCTCCGAGAGCTTTTACAAACTGGATTAAATT 717 37 97.3 34 ...........................C......... TGTATTGTCCCTTTCCAAAACGCTCTTGTAATTG 788 37 100.0 35 ..................................... TGATTTGTGCGAGTTGTGCCACTTTAGAGGTGTTG 860 37 100.0 34 ..................................... TAAAACCTCCTAAACCAGTCCCACAGGTCAGGCC 931 37 100.0 34 ..................................... TTCCGGACGCGTCCGCTCCGACTCCAATTTCTAA 1002 37 100.0 33 ..................................... TGTAGAATGGGGTCTTGACGCTTCTAGTGATCT 1072 37 100.0 33 ..................................... CTCAGGAACTTCCGAAAATTCCGTATCCTCGGA 1142 37 100.0 33 ..................................... AAGGATTCTGTATGATTGGCAATCCAAAACTTT 1212 37 97.3 0 ...........................C......... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.5 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AAACTCAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGATGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATAAATCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATATTATTGACCCCAGAAAGACGATTATTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTACTTATATAGTTTTCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTCAGCAGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAAAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTCACCGGGTTTTTCGATGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAAGTAAAATTGAACTTCTTTTTTAGAAAAGAGTAAATTGAAACCTCAATCGTCAGAATCCAATTAGATTTCCTGTTTGAAATTCTCTAAAAGTCTGTCTCAAGCCTAAAATGATCAAGATTTGATCATGGAAATTTCACAAACGCCAGATGTGGCGATTTCTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTCGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 23995-24529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000189.1 Leptospira noguchii strain 56190 Contig189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 23995 37 100.0 34 ..................................... AATAGCAGCAAAGTTGGTTCCATTCAAGCCTGGA 24066 37 100.0 35 ..................................... AATATTCTAACGGCTTTGTCTTTTTGTTTTTCGTT 24138 37 100.0 34 ..................................... ACGTCATTTATATCAAAATCCCTAAACGATTCTA 24209 37 97.3 35 ..................T.................. TATAACTGCTATTTTTGATCCAAAGGCACCAAAAG 24281 37 100.0 34 ..................................... ATGACTCTTCTTGATATATCTCCATAAAGTGCGT 24352 36 81.1 35 ....-AA......CT.......A.....A........ TTCTTGTTGGTCGACTCCATAGCCAATTGGAGCGG G [24373] 24424 35 83.8 34 ....-AA.............-..AG............ TCCTCTTGTTTATAACAACCTCGAGACCATGGTC 24493 37 91.9 0 ..............A......G.A............. | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 94.3 35 GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Left flank : GCAAAGAAAAAATATAATTTTTCGCCTAACATCAGTTAAGAAAAAGTAGTAGCTTCTCTATACACTTATAATAACTGCTAAAAACTATATTTCGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAAATTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACAATGAAATACTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAATCTTTTTATAATACATAATTTCAACCCTATTAAGCCGCT # Right flank : CAGTATTTTAAGTCTTCTTCTACTTCGAAATATGTTCCTTCTTCTTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGTAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCCTAAAATGTAGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 20771-21091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000238.1 Leptospira noguchii strain 56190 Contig238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 20771 37 100.0 34 ..................................... TAAAACCTCCTAAACCAGTCCCACAGGTCAGGCC 20842 37 100.0 34 ..................................... TCGAATCCCGGTCAAATTTCCGCGTCCGATATAA 20913 37 100.0 34 ..................................... TTTGTTTGGAGAGTCATCCAAATATTTGTAAGAT 20984 37 100.0 34 ..................................... TTTAAAAAATAAGAAGAACTTTTTTGAGCTTCTG 21055 37 94.6 0 ...........G....A.................... | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 98.9 34 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGACGCTGAGTTCAGGAGGGGTTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACAAAAATTGAACTAGATTAGTACTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATATGTGGGAACTACTATAGTTTATTAATATTTTCTAAAGAATGACCGCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCCGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGTTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGGTGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : CTTTGAGATGAGTTTCGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACTTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAAGATATAATTGATTACAAGCTATTTTAAAAAAACCCTAGAATAATCTACATTTTAAGTAAAGATAGATTATTTTCGAGATAACTTTTACCGATCCCTACAAAATTAAATACCCAAAGTTGTGACAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGCGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATCCTGTAGACTACAGAATTTATATTGATTTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 11392-10508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000286.1 Leptospira noguchii strain 56190 Contig286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11391 29 100.0 32 ............................. TAAAAGATACGTTTCATACGTTTCTTTAATCC 11330 29 100.0 32 ............................. AAGTTTTTATGATTTTAAAAACAATTTCAAAA 11269 29 100.0 32 ............................. TAGACTGAATGAGTAACATTCCCCAGCCAGCA 11208 29 100.0 32 ............................. AAGTCCATTCCTTACCTGTGGATCTTCCCAAA 11147 29 96.6 32 ............................A ATTTAAAAGGTACTGTCTTTCCATTCCAATAC 11086 29 100.0 32 ............................. ACATTTAGGCGGCAAAAAATTCCGCTTTTTGA 11025 29 100.0 32 ............................. TAGCACCGTAAGTCATAATGCCTCCGATATAA 10964 29 100.0 32 ............................. TGGAATAGGAAATTTGTGTGGCTTCGTTTATA 10903 29 100.0 32 ............................. TAACAGCTTGAGAGATTTACGGGATATGACGA 10842 29 100.0 32 ............................. TAACAGCTTGAGAGATTTACGGGATATGACGA 10781 29 100.0 32 ............................. AAACTGGCTTACTCAGCCTGGCCCCGGCTGCG 10720 29 100.0 32 ............................. GGAAGCTGGATGGCTCTCCTTGGCGCGCTTGG 10659 29 100.0 32 ............................. TCTTGCATTTAATTCGACAGCATACCCTTCAT 10598 29 100.0 33 ............................. TCTACTAGCGCCGCACGCTTAATAAGGTCTTTG 10536 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATAAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTGCACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAAGCCAGAACTGTCCTCAAGACTTTCGTAATAGGTAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGAATGGTTCGTCATCCCGGTCCGGAAAGGGGGGCGTTTCCCAGCCCTTACCGGGCTGGGCTCTCCGCTCGATCCCGAACGCGACGATCCATAGAGAGTCGTGTGCTGAGTTCAGCGGAGTGAAACGAGCGAACGCGACGACAGCGGATCTACTTCTTGAGATTAAGAAAATCAATACCGAACCTTACATCGGATCGGCAAAACTTTTCTGAAGAATTACTTGATTTAAAAATAAACCTTTTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1780-1310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000348.1 Leptospira noguchii strain 56190 Contig348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1779 37 100.0 33 ..................................... TGGTTCGACTGCACTGAACGGATTAAATCCAGT 1709 37 100.0 36 ..................................... TAGACATATAATCATTTAGACATCTGGCAATCTCGC 1636 37 100.0 35 ..................................... TATTACAGGTTTTGAATCTAGTTCGGACCTCATCG 1564 37 100.0 37 ..................................... AGAAAGAAGGGAGCTCGCATGGAAAGTTTATGAAGAG 1490 37 100.0 35 ..................................... AAAAAGAGCTGCCTCCCGGCAAGGAGCAAGAAATT 1418 37 100.0 35 ..................................... ACTATCTGAGTCCATCACAGCCACAAATCCACGAC 1346 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGCCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATATATAAATTAGTATCTTTGTGGCCGC # Right flank : TGATAATAGTTTTATTATCACCCTTCTTACTTCTATTTCTTTCTCGTATCAAAGAGCGGGTTGAAACGTCAAAAAAACGATTTATTAGAAAGAACTTTATTTTAGATTTTATAAATACTCTCACTAAAAGTAGGATTTTAGGTAATATATTATAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTCAACTTTATAGTAAAATACAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 966-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000440.1 Leptospira noguchii strain 56190 Contig440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 965 37 100.0 35 ..................................... ACGTTCAATGGCGGAAGCAATTAATCCTTTAATCT 893 37 100.0 33 ..................................... TCACGTTATGCGTCGCACTCGTGAACTCGGGGT 823 37 97.3 34 ....................................T AAAAGGCCCTCTAATATTATGGGGCCATATAGGA 752 37 100.0 33 ..................................... TGGGCCAGAAACATCAAATTTTGATTCGCAGAT 682 37 100.0 35 ..................................... AATAGCTTCTATTTGGTGATCTTCAGATTCATTCT 610 37 100.0 34 ..................................... AAAAGGCCCTCTAATATTATGGGGCCATATAGGA 539 37 100.0 33 ..................................... TAATATTCAAGGTCATTGGAGATAACTTTGAAT 469 37 100.0 36 ..................................... TCTCTACGACGAACTCTTGGAAACTTTCTACTCCGG 396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 34 GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : GGTTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTTGCGAATGTTTACCGACGAGTCACTGTTTTATTGAGTCTAAATTCAATTGTTTTTGAATTGATCCTTTCTAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACTTCCTTGTTATAGGTTCGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTGTACTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CTCTAATGCTTTCATGTATTCCGATGCGATTTTAAGTTTCTTTCTCTTGTTTGAAGGCTACATAATAGAAGTGTCTAAAATTCCATTCCTGAAACGGTGATACTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTGATCGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCACAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTAACGTGAACTCGGCATAACAAATGCGAAAGCGATTGTAGCGGAAATTCCGAAGGAATTGGAGCGAAAACGAACAACTCAGCGTCTCGCTTCTATGGTCGCTCGACGGGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 1712-1180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRD01000473.1 Leptospira noguchii strain 56190 Contig473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1711 37 94.6 32 ...................................CA TAATAGGCAAGACAGGAACTCTTTTCATAAGC 1642 37 100.0 35 ..................................... TCATCTTCGGTAACAAGAGCGTCTTGAATATTTTG 1570 37 94.6 34 .................CA.................. ACATTAGTTATCTCTCAGCCTTACCGGTTGAGAA 1499 37 100.0 33 ..................................... ACCGTCAGGAGAAAAACGAGCGATCCGCTTTCT 1429 37 97.3 34 .................C................... TTATATTTGGATTTTTTTTCGTCCTCATCATCAG 1358 37 100.0 35 ..................................... TAGTGTTACAAATGCACTTAACGCGCTTGAGAGCT 1286 37 94.6 33 .................CA.................. CGGGGTAAACACTTAAGGGATTTCGAAACCGAT 1216 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 97.3 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : TTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGC # Right flank : ATTTAAAACATCTTCGAAAAACGTTAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGCAAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //