Array 1 741-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000197.1 Cronobacter dublinensis strain cro1046A2-1 contig197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 740 29 100.0 32 ............................. AAACGGCATACGTATAACCCTGGCCCGGAGAC 679 29 100.0 33 ............................. GTTTATGAGCGCGTCGTCGTTAAACGGCGAAGA 617 29 100.0 32 ............................. TTATCGGGGAGGTATTTCGTTTTCTGTTTCGT 556 29 100.0 32 ............................. GATGCGCATCTGGGACGACGACTGGATCACGC 495 29 100.0 32 ............................. CTTACAACATTTACGCCGACTATATCCGCGTT 434 29 100.0 32 ............................. ATGGCAGGACAGAAGGTGAGCGTCAGCAGCAG 373 29 100.0 32 ............................. TACAGTATTTGCCGCATCGTTAGTGACGCGCC 312 29 100.0 32 ............................. GGGCTTATCGAAGAGGCAGCAAGCGAGCCTGA 251 29 100.0 32 ............................. TTTATTGCTCCGTTGTGGAACTTGAGTTAACC 190 29 100.0 32 ............................. GATCGGCCTGGCCCTGCGCGGCGGCCTGGAAA 129 29 100.0 32 ............................. AAGAAATAGAAGAACTTGATGAGCGCGATGCA 68 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTAA # Right flank : GACAATAAGTTTTCATTACCTGGCCTTCAGTGGGTGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1171-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000109.1 Cronobacter dublinensis strain cro1046A2-1 contig109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1170 29 100.0 33 ............................. ATTAACTGAGTGTGGAATTTTACACATAGAAAA 1108 29 100.0 32 ............................. GATACGCACCTGCAGAGCGAACTGGGTAAACG 1047 29 100.0 32 ............................. CATTGCTTTAACCTGTTTTTTTCGGCCTGGTA 986 29 100.0 32 ............................. GCTTTTTTCAATTCGCCTTTGGTGATGCGCTG 925 29 100.0 32 ............................. TTGGCATGGGCAACTACCTGTCCAGACCGGTC 864 29 100.0 32 ............................. TGATCGAAATGCTCGAGGGCATCGTTCCGAAC 803 29 100.0 31 ............................. GTCAGGAATTTTTTCAGCGCTTTATCTTTTG 743 29 100.0 32 ............................. GGAGTTGACGGCCGCCGCGGTTGCGCGTGAGT 682 29 100.0 32 ............................. CAGCGACCGAGCACAGTAAAGCTTTTGAAATG 621 29 100.0 32 ............................. ACCCGATGAACGCAAGCTTCTGATTTTATATA 560 29 100.0 32 ............................. TTTCACTACTCACCCCCTGTCTCAATAATTAC 499 29 96.6 32 ............................T CACGCCAGAACAGGACACGATAGCTTTTGCGC 438 29 100.0 32 ............................. TAATTTTCAACATGGCTGAAAAAGACTTAAAT 377 29 100.0 32 ............................. GTATTGCCGCCGCAAAATCTATGGGGGCAAGT 316 29 96.6 32 ............................T TCGGCGGTGCCGCGCTTTATCCCTGTCCACAT 255 29 100.0 31 ............................. GCCGGGGGCCGCAGTTAGCGAACTGGCCGCG 195 29 100.0 32 ............................. CTTGCTTGCTCTTCAATTTGCTGTCCCGGATT 134 29 100.0 32 ............................. AGATCAGCAATTGCTTTCATAAAGGTGGTTTT 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAACGAACCTGGATCGAAAATAATTTTTTCAC # Right flank : GTGAGTTTGTATTTTTCTCTTAACTCCCCAATACGTCGTTCCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 490-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000221.1 Cronobacter dublinensis strain cro1046A2-1 contig221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 489 29 100.0 32 ............................. GAATTTATTCTGTTATAACGGGGGTGTGGCCG 428 29 100.0 32 ............................. TATATTTCTGATCTCGGGCCGTACCCGGCAGG 367 29 100.0 32 ............................. TTTGCGTCCGATTCCCCTACTTGATCGAGCTG 306 29 100.0 32 ............................. GTGCAGGCCATCGGCCTGTCGTCCGGGAAAAT 245 29 100.0 32 ............................. CGCTTTTATTATGCGCAAAGATGAGCACGTTA 184 29 96.6 32 ................T............ GAAAAAATATGAATCCGATTGATACATTGATA 123 28 96.6 33 .........................-... GAATTTTATTCTGTTATAACGGGGGTGTGGCCG 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AT # Right flank : GTTATTTCTGATCTCGGGCCGTACCCGGCAGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43699-44215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000035.1 Cronobacter dublinensis strain cro1046A2-1 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43699 29 100.0 32 ............................. GATACGTATAACCCAAACGACGATATCGAGTT 43760 29 100.0 32 ............................. CCGCGCATAACTCCACAGAAGCTGGCCGACGG 43821 29 100.0 32 ............................. TCAGCGCGAAACTTACCGTTGAGCGCCTCTGC 43882 29 100.0 32 ............................. TGTTTGAATTAATCATGGTGAATGCTGACATT 43943 29 100.0 32 ............................. TTTGTATGTATTCATCGTTAAGGCTCCTTATT 44004 29 100.0 32 ............................. TAATGCTCTTTTTCATACTTTGAACGGCGGGG 44065 29 100.0 32 ............................. TTACATTTAAAAAGCTCGAGCGCGACGCCGGG 44126 29 100.0 32 ............................. TTCAAGCGTCGGCGCCGGTTGACTTCATGAGG 44187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GCGTGGGACGGTACGACCGGCGCGCCGGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25318-24991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000049.1 Cronobacter dublinensis strain cro1046A2-1 contig49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25317 28 100.0 32 ............................ GTAGCGCCGCTGGCCATATTGTTGATCACGAT 25257 28 100.0 30 ............................ TCATCGCAGTCGCCCAGCGCGATCTCTATT 25199 28 100.0 32 ............................ TTTGTAGACGTAAATCGCGACGTCGCCGTAAA 25139 28 100.0 33 ............................ GCGCTTCCACCTGCTTGCAGATGCAGTAATCGG 25078 28 100.0 32 ............................ TGAAGGCGCTGACTGCGATTTAATGCGCTGAC 25018 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAGCGTGCGCCTCGCGCAGCCGGACGTCGA # Right flank : TGCCATTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATAGATAAACTTCTTTATTTATTCGTGCCCTTTGACGTGGCAGAGTGCATGACGGCCGTGCGCCCGGACTGATATATTTTAAAAATTAAAGGGATGTCACGATATGGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAATCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGAGTGATGGTGGGTTTTTGTGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 776-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000045.1 Cronobacter dublinensis strain cro1046A2-1 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 775 29 100.0 32 ............................. AAAATCGCACTCGCAGAACTGGTCTTTATGGA 714 29 100.0 32 ............................. GATGGGACGCCATGTCCAATCAGTTGATGCGG 653 29 100.0 32 ............................. GGTTCGCTGCCGCCGCCATCCTCACCCGTTCT 592 29 100.0 32 ............................. AGAAAAATGATTACTTACATTACCGATCAGCA 531 29 100.0 33 ............................. TCTAAATCGGAGCATTGCAGGCAATAGTCAGCA 469 29 100.0 32 ............................. CCTTTCTGCTCAGGGTATTTCGTTGCCAGGAG 408 29 100.0 32 ............................. AAATATCTGAGCTGATACCCGCCAGTGATGTA 347 29 100.0 33 ............................. CAGTGGGGCGTCTGGCGGCGGCGCGAACGGATC 285 29 100.0 32 ............................. CTTCTTTATTCTGATTTGGGGTGTCTTGATAT 224 29 100.0 32 ............................. ATGCTGGCGCTGATTCCGTACTTCCAGCGGAA 163 29 100.0 32 ............................. TTAAAAGTTTTGTCTCCGTGCCGTAGGCTGCT 102 29 100.0 32 ............................. TTGGGCAAAACGCATCAAAACGTTCTGGTCTT 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCAGATTCGCTCGCCGAAGCAGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGTGTTAACCGACGCATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCGTTAAGAATCAGTAGGTTAACTGCTCTTTTAAGACTGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGGTGTGAAAAAGTTCCTTATAGAAAAGTTATATAGTTTTAGA # Right flank : GACGGTAAGGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28076-26770 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000045.1 Cronobacter dublinensis strain cro1046A2-1 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28075 28 96.6 32 ........-.................... AAGAAATAGAAGAACTTGATGAGCGCGATGCA 28015 29 100.0 32 ............................. ACAATAAGTTTTCATTACCTGGCCTTCAGTGG 27954 29 100.0 31 ............................. AATTTATTTTGCCGCAAGCTATTCAGTATGC 27894 29 100.0 32 ............................. GCTGCGCTCAATCCGTTCATTGGTAATCCTCA 27833 29 100.0 32 ............................. TTGTTGCGCCGCATTTTGTACGTTCTTTGCTG 27772 29 100.0 32 ............................. ACGTCGTAGTCAACCAGCCTGACGAGCCGGAA 27711 29 100.0 32 ............................. CTTTATCCTCACAAATTTTGACAACTTGATGT 27650 29 100.0 32 ............................. ACGTACGCCGCTTTGACCCACCCCGGCTCGTC 27589 29 100.0 31 ............................. CACGACCGTAAAGCCGGTGTGGCGGCGTTTA 27529 29 100.0 32 ............................. TTAATCGAAACGCATAAAACTATTTGCGAGGA 27468 29 100.0 32 ............................. GCCGTGGAAGCTACCAGCAAGGCCAAGAACGG 27407 29 100.0 32 ............................. CTACGGCCAGGCGGTTAAGCGCGCGGATTATC 27346 29 100.0 32 ............................. GCAACGTGGCCATAACAGGCGGCAGCCTGACC 27285 29 100.0 32 ............................. CTGCACGGTGATGTTTTGCCCTGTGCTGGCTA 27224 29 100.0 32 ............................. TGTGGGTGGTGGCGGTGTCTTTGTCGCGCAGG 27163 29 100.0 32 ............................. ATCATTATCAATGTGTTAGCGTAGTCCGAAAC 27102 29 100.0 31 ............................. AACGCCAGACGCCGGATCAGCGAGAAAAATT 27042 29 100.0 32 ............................. CAGTTTCCGCCCTGCGCGTAGGTGGTGGCGAT 26981 29 100.0 32 ............................. TTCCCAGGCAGCAACGCCTTGAACCATGACGT 26920 29 100.0 32 ............................. ATAACCGCAGCCGCGCTCGTTAACGTCGCGCA 26859 29 100.0 32 ............................. CAGGCGCCGACCACTGTTGAAATGACCGTAAT 26798 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCCGCGCCAGCGGGGATAAACCGGATCGGCCTGGCCCTGCGCGGCGGCCTGAA # Right flank : AACCCATTCGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 238-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000005.1 Cronobacter dublinensis strain cro1046A2-1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 237 28 100.0 32 ............................ TAACAAATCAAAAGGAAGCGGCGGCGGTGTTT 177 28 100.0 32 ............................ GGTTTCCCCAGTGACGGTAGCCGTTATAACGA 117 28 100.0 27 ............................ AATACCTGTAGTGTCACATTTTGATAT 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAATACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTAGCCCTTCGATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGTGCTCGACTTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : AGTATCGGCAAAACCTACGGCGGCGCAGCGGAGGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4272-3510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNX01000084.1 Cronobacter dublinensis strain cro1046A2-1 contig84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4271 29 100.0 32 ............................. ACCTGGCACGGCAAAGAAATCGACGATCTGCC 4210 29 100.0 32 ............................. CCACTCAGAATTACTTGCGGATTTGATTTTAT 4149 29 100.0 32 ............................. TAAGATGTTTGAGCGTCAGGGTGCCGCTCTTT 4088 29 100.0 32 ............................. AGGGAGATGAAACTTGTGAGTACGGCGTTGAA 4027 29 100.0 32 ............................. AGCGCATGCAGGAAAACATCGATTCATAAAAT 3966 29 100.0 32 ............................. TGATGCGGACGCGCGGGTCGAAAACTACGTCG 3905 29 100.0 32 ............................. TACCGGACGTGGCGGCTACGCGTACCAGGATA 3844 29 100.0 32 ............................. CTGCTCGCCGGATCGGTGTCGTCTGTCGGCAT 3783 29 96.6 32 ............G................ GCGGCGAGAAAATTGTGCGGCCGATACCTGAG 3722 29 100.0 32 ............................. CATTCGGATAGAGCCTCGTTGGTTAATTGAAA 3661 29 100.0 32 ............................. ATTATACCGTCGAGGGCTTCCGCGCCATGATA 3600 29 96.6 32 ...........A................. CGCTGTCGGTGTTCGCGTGTGAGTTTGACACG 3539 29 82.8 0 ..A......C...C......A.......T | G [3516] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGATAAACCGCGCCTTCTCTTCGTCAGTCGCGTAGCGCCCC # Right flank : TTGGAATAGTTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTATTATTATATTTAATAAAAATAATAACACTTCTTAAAATAGCTGATTTGTATTGTGGTTAATGGATTTTAAAGCTTTATTACAATGTCTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAAATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGTGCGCGATCGTGCTTATAGCCAAAGTCATCATAAGTGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCATTGATAAAAGCAGGGTTTTATGAGGTTTATGGGGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //