Array 1 181752-181963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000013.1 Streptomyces brasiliensis strain NRRL B-1626 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181752 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 181813 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 181874 29 100.0 32 ............................. CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 181935 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : CTCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1606-1939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000026.1 Streptomyces brasiliensis strain NRRL B-1626 contig26.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1606 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 1667 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 1728 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 1789 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 1850 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 1911 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAATCCCACCCCACATCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5226-5681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000026.1 Streptomyces brasiliensis strain NRRL B-1626 contig26.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5226 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 5287 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 5348 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 5409 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 5470 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 5531 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 5592 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 5652 29 80.0 0 .........C..-GT......C.....T.. | G [5660] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTGCGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : GCGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCGCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1714-1926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000031.1 Streptomyces brasiliensis strain NRRL B-1626 contig31.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1714 30 100.0 31 .............................. GTAAGATCACCATCCGGAATGCGGCGAACGT 1775 30 96.7 31 .............................C TACCCGCAACTTCCGGGCGGTGGGCGGCTGT 1836 30 100.0 31 .............................. TGGAGTGCCTGGTCTGGGACATGGACGTCAA 1897 30 90.0 0 .........................CA..T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTGTGCTGATCACGACGATCGGCACGGTGCTCGGCACCTGGCTGGGCCGGACGAAGACCACGGTGCAGGAGATCCCGGCGGAGGGGATGGACCCGGCGCCCGCGCAGCCCGAGGGCACGTGGACGGTGTCGCCCGAGATGTACCGCTGGTTCCAGGACCAGATGGCGTCGATGCACGCCCGCATCAGGACCCTGGAGGACGCGGAGGCCGAGGCCCGGACCCGGGCGGACAGGACGGACCGGCTGCTCGGCCTGGCACTCGACCACATCAGTCAGCAGGACTCGCGCCTGACCGCCGCCGGCATGCCGCTCGTCCCCATGGACCCCGAGCTCGTCGCCGCCCGCGACGCCCGATGAAACGCCCCCGCCCCGGCTTCGGCCGGCGGCGGGGGCGTCTTCGTACATTCCGGGGCCGTGGCGCAGGATCCACCGGCTAGCATCACGTGAGACAAACTTGCCGATTCTCGTGCTGGTGGCAGAAAAAGTCGCAGGTCACGAACT # Right flank : TTCAGACTTTCCGCAGGGGCGGAACAGTACGACTTCCCACTCTGCCGAGTGAAGCGCGCCAGAATAAACAGCGCCATGGGCCCGTAGGCCGATAGCAAGACTCCGTGATCACCAAGACCATGCGGGGCCTCGCCGCCGCCACTCTCGCCATCCTGCCCCTACTCTCCGCCACCCCCGCACAGGCAGTCCAAGCCCTTCCTCTGGCCGATGCCATCCAGGAGCTCCCGCTTGCCGTTGAGTCCCGCGAGGGCTACCAGCGCACGTCGTTCAAGCACTGGGTGGATGAGGACCGGGACGGCTGCTCCACCCGGGCGGAGGTGCTGATCGCGGAGTCCCGCGTGCCGGCCACGGTGGAGCCACGCTGCAAGGTGCTGGCGGGTCAGTGGTACAGCTACTACGACGGAGTCACTCTTGAAGCTCCGGGCGGCCTTGACATCGACCACGTAGTCCCGCTGGCCGAGGCTTGGGACTCCGGGGCCTCTGGCTGGACGGCGGCCCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 422951-422674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000007.1 Streptomyces brasiliensis strain NRRL B-1626 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 422950 30 93.3 31 ........T....................C TGCACCGTCGCCAGGCGAGCGCGCAGGACGA 422889 30 96.7 31 ........T..................... AGCGCGCGGTGTCGTAACAGGGCTCGGCCGA 422828 30 93.3 31 ..............G..............C GGCCGCACTGGCACTACCGCACCGTCGCCTG GGG [422807] 422764 30 100.0 31 .............................. CGGTGCGAAAGCCGAGCTGCGCCCAGACCGG 422703 30 90.0 0 ...........T................GT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCGCTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGCCCAGGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGCGGCCCGGGAGTTGAGCGCGGCCAGCAACGGCGGCACGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAGGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : CGAGCCACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGAAGATCCGCCCCTACGCTTCCGACGCCCCCGACACCGCCACCCGGAACCCGACACCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAAAGAGCCGACCGGCGTCGTCGTGCCCACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGTACGGGG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCTGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 427764-427490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000007.1 Streptomyces brasiliensis strain NRRL B-1626 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 427763 30 93.3 31 .......T................T..... GGTGCGGGGCGGTGCCCGGGTGGTCGACGTA 427702 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 427641 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 427580 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 427519 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGGCAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGCTATGCCGATTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCGA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 452014-451496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXB01000007.1 Streptomyces brasiliensis strain NRRL B-1626 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 452013 30 100.0 31 .............................. CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 451952 30 93.3 31 ...A.........................G GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 451891 30 93.3 31 ...A.........................G CCATCAGCGGCACCCACGCGGGGCGCTGAGT 451830 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 451769 30 96.7 31 .............................G GCTGGCACCCGCACATCCACGCCATCGTCCT 451708 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 451647 30 100.0 31 .............................. GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 451586 30 93.3 31 .....................A......T. CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 451525 30 86.7 0 ...........A...........AA....T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : GCTCCAGGTCCGGGCCGGGGAACAGGAGGTCGTGGTCCCCGCACGCGGGTTCCCCGCCACAGCGGAAGGCCGCAGGCAGGGCAGTCCCCGCCGTACGCGGCGGAGACCGCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTGCCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGTCGGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //