Array 1 513-1934 **** Predicted by CRISPRDetect 2.4 *** >NZ_OACS01000018.1 Neisseria meningitidis strain Neisseria meningitidis isolate R843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 513 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 579 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 645 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 711 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 777 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 843 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 909 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 975 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1041 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1107 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1173 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1239 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1305 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1371 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 1437 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 1503 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 1569 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 1635 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 1701 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 1767 36 100.0 30 .................................... CAGCTGGTTAGAGCACACGCTTGATAAGCG 1833 36 100.0 30 .................................... GCAAAAATCGGCTTTAGAAAACTTTGTGAT 1899 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TCCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //