Array 1 55693-55235 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADDSP010000110.1 Escherichia coli strain EC_1661 S11_paired_trimmed_contig_110, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
     55692	    29	 100.0	    34	.............................	CGCCATCAGCTATAACACTGCGCGGCTTCATCAA	
     55629	    29	 100.0	    32	.............................	CGCAGGTCGGCGAGCATGTTGCCGGGTTCGGG  	
     55568	    29	 100.0	    32	.............................	ATAAAAACCATTTGTCAGAAGCGGAAAAAATC  	
     55507	    29	  96.6	    32	............T................	AATCAGGGCTGCGCGCAGTGTGTGCGTGGGTC  	
     55446	    29	 100.0	    32	.............................	AGGATGCTGGCAAGCCTGCCATTTTTCGTGCA  	
     55385	    29	  96.6	    32	.......T.....................	CCGACTGATAAATCCACCTCATGGCAGGTCTC  	
     55324	    29	 100.0	    32	.............................	GGCGCACTGGATGCGATGATGGATATCACTTA  	
     55263	    28	  75.9	     0	..A........C..T....T-.G.....C	|                                 	C [55238]
==========	======	======	======	=============================	==================================	==================
         8	    29	  96.1	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                  	       

# Left flank :   CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTTTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGTGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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