Array 1 115861-114810 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRL01000002.1 Pseudocitrobacter faecalis strain DSM 27453 Ga0244571_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115860 28 100.0 32 ............................ TAAGGTGCATTTAGGAATCGTAAAATATGGGG 115800 28 100.0 32 ............................ TGGTGTTTCCCCGTCTCAACGTTCGCGACGTC 115740 28 100.0 32 ............................ CGCATCGATTTACACATAAACTCTGTTGTGCG 115680 28 100.0 32 ............................ TGTTGCAGGGGGGCGGCGATCTGCTCGACAGC 115620 28 100.0 33 ............................ GATTTAGATTGCGCTGACATAAAATTATCAAAT 115559 28 100.0 32 ............................ TTCACAGCAAGATGAAATCAAGGCGGTTTTAC 115499 28 100.0 32 ............................ CGATGGCCTCCGACCCGGATTTGATCGGCATT 115439 28 100.0 33 ............................ AGTTCGCAATGAACCCCCAGAGGCTTACGTGAT 115378 28 96.4 32 A........................... TTTGACGTAGTTACGATCCGGCACGGTTGCAC 115318 28 100.0 32 ............................ TACACCATCAATATCACACGTAAGATTAATAT 115258 28 100.0 32 ............................ GTTAACGCGGCACTATCGCCGGACGACACGCG 115198 28 100.0 32 ............................ GTCGGTCGCGAGCAGGTCATCAGAGGTGATAT 115138 28 100.0 32 ............................ TGTAGGCTGCAATTCACAGCCTTGCCCGGCAA 115078 28 100.0 32 ............................ CACGAACGCGCATCAAAGCGGGAACTGTATTC 115018 28 100.0 32 ............................ CCCTGCGCCGCGCGATCGTGCTGTGTGCCGGT 114958 28 100.0 32 ............................ AATACTTCGCCCGTTTCGAAAAATGAGAGGGA 114898 28 100.0 32 ............................ GATGAGTATCAGAGAGCCTGCCGGAGGGCAAA 114838 28 82.1 0 .......A...CG..C......A..... | C [114815] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGGACATCACTGCCATATCTGAACATCAAAAGCTTATCAACCGGGCAACAGTTCAGGCTATTTATCTCTCATGGTGAATTACTGAATGCGCCTGTTAAAGGCACATTTAGTAGTTATGGTTTAAGCGCCGTCGCGACAATCCCCTGGTTTTAAGTTCAACAAATACCGCCCTGTAAGGGGCGGTACTGGAGAGTGATTGCCTGATGCGCTTCGCTTATCAGGCCTACGAGGTTTCTGCAATATATTGAATATGCGTGGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAACAGAACGCACTTTGTCAGCAGTTTGAGACACAGCCCTGTTCACCCATTACTTTCCGAATCTATAGGAACCCTTTTTTCTGATGTTAATGTAACTTGTTGATTTTTAGTGAGCGTAAAGAGCAAGGAGAAAAAAGGGTTAAGAGAGGAGATTTGATGTTTTGTTTAGTTTAACCAATGGGGTAGGGTTATAACGCTTCA # Right flank : CTCGTTCTCAGCGATAACGTGCTGTCCAGACAGCCATTACGCCACAAACGGAAAAGGCCGGGGATTTCCCCGGCCTTTCAGCATCTGGTTGCCACTAAAGGGCTCAGGAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAACTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCAAGTTCTACGCGGAACATAGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGTATCACTACCATAGTTTTTAACCGGCAAGATAATGCCGAACTTCATCATGTAAGTAAAGATTTTGCGAATGAATCGCCGAAAGTCGTTTTTGCGCATTACCCCATCGCCACACGAAAAGAGCGTGCGAGTAACGCAGACCGGGTTGGATACTGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 127056-124440 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNRL01000002.1 Pseudocitrobacter faecalis strain DSM 27453 Ga0244571_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 127055 28 100.0 33 ............................ GCAAGTATCCAAGGCTTTTTAAATTTACACTGG 126994 28 100.0 32 ............................ GAGCCCGCCGCGCCAGCGCAACATCAACAATT 126934 28 96.4 32 .......A.................... GAGTAACATACACATAAATGAAGCTACTTCAA 126874 28 96.4 32 .......A.................... GCTTGATTTACTGCCGCGGTCAATGGGTGAGG 126814 28 96.4 32 .......A.................... TATGCAAATTGCATCACCACCTACAGCATAGT 126754 28 96.4 32 .......A.................... ATCCTGCAAAGCGGGTTTTTTCGTCGGTAGGG 126694 28 96.4 32 .......A.................... AGAAGAAGTTTGTCAATTGCTGGGTGGCATTA 126634 28 96.4 32 .......A.................... GCCGGTATCCCACGCCCAGCGGCTGACGCCGA 126574 28 96.4 32 .......A.................... GGCGAAATGAGGCTCTCGACTGCTGGGTGTAC 126514 28 96.4 33 .......A.................... GTGGGACGTTCACCGGGGGCAGTGTGACGACGT 126453 28 96.4 32 .......A.................... AACTCGCGATTACGTGATTTTTTACGTAACGG 126393 28 96.4 32 .......A.................... AACTCGCGATTACGTGATTTTTTACGTAACGG 126333 28 96.4 32 .......A.................... ACGTAAAACAAATATGTGTGCATCCCCGGCTA 126273 28 96.4 32 .......A.................... AGGTTGGCCAGCGCATGAAGCTGGCGAACGGC 126213 28 96.4 32 .......A.................... CACTCTGGAGCAGGCATTATGCACAAAACCCG 126153 28 96.4 32 .......A.................... TCCTTAAAAGATCAAACCGGATCGATGCGCAT 126093 28 96.4 32 .......A.................... AGCTTCATGCGCTGGCCAACTCGCGATTACGT 126033 28 96.4 33 .......A.................... TCCGGTTCGGCGACATGCGCGACAGATCGCCAT 125972 28 100.0 32 ............................ TGGCGGCGCGGGAATTTCGACCGCACAACCCG 125912 28 100.0 32 ............................ TCTGGATTTTATCCCCTCTAGCTCGTTGCGAA 125852 28 100.0 32 ............................ GCATGCAAGCGCGAACCTTACGAATATTCCTC 125792 28 100.0 32 ............................ GATAAACGGGCACTTTTCCGAAATTTTTTTTA 125732 28 100.0 34 ............................ CTATGCGTTTCTACAGCGCTTTGTAACTCGTTTG 125670 28 100.0 32 ............................ CCGCTCAAACACTGTGCAACTTGCTCAATAAC 125610 28 100.0 33 ............................ GCGCGGAACTCGCGTTATGGACGTGGGGTTTGT 125549 28 100.0 32 ............................ AAGGAGAAAATCATCTCAGGCGGTTAGTGGAG 125489 28 100.0 32 ............................ CGCAGTTGCCGTATCTGTGGGCGACGGTCAAC 125429 28 100.0 32 ............................ AGAGGGGCCCCCGCGATTTAGCACCTGACGAG 125369 28 100.0 32 ............................ GTGGAGACTCTCAGTGTTGGCAGACAACCGGC 125309 28 100.0 32 ............................ CGACTGCGGTGGCTGATGCCTTGCGCGGTGCG 125249 28 100.0 32 ............................ TCAAAACGCACTAGCCCGGCTGAAAAATCATG 125189 28 100.0 32 ............................ GTTTGTTTGCCGTTCGCCAGCTGCGTGAGCTG 125129 28 100.0 32 ............................ CATGTGCATAGCTTGATTTTTGACGGATACCG 125069 28 100.0 32 ............................ CAGACCAGCGTAGGCGGGGTGGGTACGGCACG 125009 28 100.0 32 ............................ ATAACCGAGTATGCAGCCCCCGGCCCTCTATC 124949 28 96.4 33 .............A.............. ACTGAATGGGATCTGGAGACCATGCAGTGGGAT 124888 28 100.0 32 ............................ AGCACCGCTGGTGGATTAAATTAATCAGGTGA 124828 28 96.4 32 .............T.............. AGTTCGCCAGCGTGCGTGCTGCTACTCCGATA 124768 28 100.0 32 ............................ ACCCCCGGCGAGCTGGCCGCCGCTATATCTGG 124708 28 100.0 33 ............................ ACACAGCCGACGATCTCGATACACGCGCGAATA 124647 28 100.0 32 ............................ GGTGACTGTCGGTGTCGAACCGAAAATGGCCT 124587 28 100.0 32 ............................ GCCGCGTTCGGTCAGGCTCGCAACGAGTTTCT 124527 28 96.4 32 .....................C...... ATCTTCATAATCACCGGAATACGCAGTAAGCC 124467 28 71.4 0 ......C....GG..AA.CA.G...... | ========== ====== ====== ====== ============================ ================================== ================== 44 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGGCTACGACCGCGCAATGGGCGCCCGTCCAATGTCACGCGTGATTCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGCTCGCTGGTGGATGGTGGCCAGGTGACGGTGGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGTTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCGCATTAATTTCTTTGAGGCGATTGGCGACCGTTGAAATGCCCGATGCGCAAGCTTATCGGGCCTACGGGTGGCCAGGAACGAGTAGGCCGGATAAGGCGTTGTAAGCACATAGTTTCAACCAAAAGCCGGGCTGGAGACAGCCCGGCTTTTTTATGTTCGTCGGAATGGTTTTGGAACCCTTTTTTTGGACATGTTTGTAAGTTATTGATTGTTAACGCAGGGAATTGGGACGTGAAAAATAGGGTCAAAAGGGAGATTTGAGTGTTAAGTTTAAGGATAACAATATGCTAGAGTGTTTTGGGTTCA # Right flank : TATCGCCAAAGAATTCCGCCGCTGGATGCGGGCATCACTGCCGCCCTGAAAACCCAAATTCCCGCCTTTTTACACTAATTTAGTTAGCAAGTGAATAATCACGACATTGATCAATGTTTGTGTATTGCAACAATGGTTTATTACGCCTAATCAATCTAAAAGCAATAATCACAGGATGTGCTTATGCCTGCTCACTATCTCACGCCCTCGGACCTGAAAACCATTCTGCACTCTAAACGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTGCAGGTCAACGGTGGGCGTGTGGAGTATGTGACCAGTGAGGGCAAAGAGTCTTTTTACTGGAATATCCCTATTGCTAACACCACGGCCCTGATGCTTGGCATGGGGACATCAGTCACTCAGGCTGCGATGCGTGAATTCGCCCATGCGGGAGTGATGGTGGGGTTTTGCGGTACGGATGGCACGCCGCTTTATGCTGCAAATGAAGTGGATGTGGATGTCTCCTGGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTACCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //