Array 1 13342-13948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVY010000110.1 Microcystis aeruginosa LEGE 00239 NODE_110_length_16268_cov_21.0271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 13342 36 100.0 37 .................................... CTAGGCTGGGATGGTTGACACTTAAATACCCGTTCGT 13415 36 100.0 36 .................................... TGAGATAAAATTGTATTTTCACTATTAGTCAAAGCT 13487 36 100.0 35 .................................... AGAATCTTCCAGTCGTCGGGCAGTGGAACCTTAAG 13558 36 100.0 37 .................................... ATCATTGGCAATCTTTAATTAAAGCGGCTTTTCGGTT 13631 36 100.0 34 .................................... CGAAGGGAAATATTATGAGCGAAGCTCGCTTAAG 13701 36 100.0 36 .................................... AAAAATTTAAACTCTGCTTTTTTAGACGCGTTGACG 13773 36 100.0 33 .................................... CTATTGGCATTACTTCTAATCACAGAGTCTATG 13842 36 100.0 35 .................................... AGAGGCTAGTCGCAAAAGTATTTCAATCTTTTCTA 13913 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 100.0 36 GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GAAACTCCTAGTTCTCAGCCACCAAATAATGCTTGGATTTGGACCCCTAGAAAACCCCTAACTTGATTTTTCGCTGTTGGTTAAGTGCGCGAATGCGAGAAAAATTGCGCTGGGAATTGGAAAAAGTCCTCACCCTAAAAGACGACTTAATTTTGATTCGTCTGTCGGAGCAGTGTGTGCGCGATCTGCCTAAGTACAACCGACCTGACACATGGCTTTTGGACGAAAAAGGGTTTCGGGTAATCTAAAAAAAACAAGCATCTCTGGCTGGGAAAAAATCCACGGGCTAAAATTTATTTGTATTGCTAATGCTGTCTCGGTTTCAGGGTTTGACAAGGAACAATTCCTGCTTGCATTTTCTAAAAATCTCACTGGATAACGGTTTTCAGATTCGGTGCTGTCACTCAAAAGCTCTGATCAGAAGATTTCTTGGCGTTTTTCTAGAGGTGCTTGTAAAATGGACTGTGAAGCTATACACCAAAGGCTTTTTCAGCCTCGCC # Right flank : CAAAGACACCCTACTGAACTGTTTCAGCTAAAATAGAGCAATAAATTTGAGCTTAAAGTCTTAGATTATAGAATTTATAGCATTTTTCTAATACACCAAATTAGCTGAAACAATCCACTACAAGAAATTAAGTTTATTACCCCTTCAGTGTGATAAAGTGGGAAGCGGAGATAGACGATAGAGTTGCTCATTTGTAGGGGCTGACCGATGAGGAAATAAAGATTATTAGGGGGGAGTAAATCATGAGTACAGAAGAGGAAATTCTCAATCAAATAGCAAACTTCACTTCCACGGAATGGAATATGTGGAAAAAACAACAAGAACAGAAATCATTACACAGGTTGTCTTTTCCAGGCTTCCATCGATTTTCAAATAAAAACTTTCAATATTTTGATTTCTCTAAAATAGATTTTCCTTCTAATGAAATATGGAACTGTGATTTCAGTAACACTAATTTAATTGAAGCCACCTTAAAATCTACTAAAATTCATCAAACCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 5215-3517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVY010000191.1 Microcystis aeruginosa LEGE 00239 NODE_191_length_8273_cov_16.2043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5214 37 100.0 37 ..................................... TTTGCTGGGGCGGCAATATCGACAATTTTAGGGTCAC 5140 37 100.0 36 ..................................... GGAGTCCGAATCAGGTGAGGTTGGCTCTTGAAAAGA 5067 37 100.0 35 ..................................... AGCAGATGGGCCAACCCCAGAGACAACCAAAACAC 4995 37 100.0 34 ..................................... AGGGTTAATCCCACCCCACCAGCTTTGATCGTGC 4924 37 100.0 34 ..................................... TCAGGATTAAAGCTTGTTAGATACCGAGCAGCTT 4853 37 100.0 34 ..................................... TTCCCCCCGTCCAAACCCCTCCCTGAATCTCGAT 4782 37 100.0 35 ..................................... GAATTTGGGGCGCAACGAGAGCAAACTGGGATTAT 4710 37 100.0 36 ..................................... CAGTATTCTCCGGATCAAAATCCTGAATCAAGGCAA 4637 37 100.0 38 ..................................... GAGAGCCCATAAAGCCGCCTTCACGCGTCATGCCAAAA 4562 37 100.0 35 ..................................... CTCTGGTAAGTCTCTTTGAAGGGCTTCCAAAAATC 4490 37 100.0 35 ..................................... CATTCGGCGATTTTGAAGCTTCGGGAGATAGAAGG 4418 37 100.0 35 ..................................... GTAGTGCAAGAGGAGGAATCAGCGATTCTGGTTTT 4346 37 100.0 38 ..................................... ACCCGTATCATCTCGCTCGGCTACCGTCCCCGGTAAGG 4271 37 100.0 34 ..................................... CATCTCTTGATTCTCTGATAGATTTATCAGTATT 4200 37 100.0 38 ..................................... AATCGGGGCTGATCTAGAAAATTCCAGTAGCGAGAAGA 4125 37 97.3 33 .......................T............. GTTCCCGCCACGGATAGGGCGGCGTGGGTGAGG 4055 37 97.3 35 .......................T............. AGTTCTAAAAATCAATCTATCTCCTTGACTCCTTC 3983 37 97.3 35 .......................T............. AAATTGAGATTAGCACTAACATTATTATTTATCAA 3911 37 97.3 35 .......................T............. ATCACAAACTACGCGCACTATCGCAGCGCATATTA 3839 37 97.3 34 .......................T............. TTGTGAGCGCCCGCAGCTAATGGCTCACAGTGAG 3768 37 97.3 35 .......................T............. CTCCCCCCGCTCTTGGGGAGGGGGGGAGCCGGAGA 3696 37 97.3 32 .......................T............. TCTCTGGAATCCTCGGAATCCCCCTCTCCACC 3627 37 97.3 37 .......................T............. ACGCCTAGGTTTTCGGCAATTACTGAAGTATCGAATT 3553 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.0 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCCAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACGATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTACAATGGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAATCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : TGGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATTGTTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 11551-12541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVY010000115.1 Microcystis aeruginosa LEGE 00239 NODE_115_length_15861_cov_14.8609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 11551 36 100.0 36 .................................... GAACACTTGTACTGTCTAGGGTTTTTGTAAGAATAA 11623 36 100.0 36 .................................... TTAAATCCGACGGCTCATCATCCTCGTAAATAAAGC 11695 36 100.0 38 .................................... TACCTAGATATAAGTACCTGATAGGGTTGACAATTTTA 11769 36 100.0 38 .................................... GAGAACTGCTGAATTGTCGGGATTAACTTTTAATCTCC 11843 36 100.0 38 .................................... CGCCGATAGAGAATGCCGAAAACTCGATTAGTAAGCAG 11917 36 100.0 40 .................................... GGACTACTACTCTTCGTTCATCGCCACTTGTAAGTCTTAT 11993 36 100.0 35 .................................... TTCCATTACTGCTTCGTATTGTTCTTGAGTTATTG 12064 36 100.0 39 .................................... TTTTAAAATAAGAGTGCTAGTTTTGGGCAATCTTTTAAA 12139 36 100.0 39 .................................... TCGGAATAAAATCTCTCGGTTCTTTCAGAGATTACTATA 12214 36 100.0 38 .................................... TTCCTTCCGCTTTTTCTCTGCCTTCTCTTCTACCCAGC 12288 36 100.0 37 .................................... GAACCACTGGTATAACCGACTAGATTCTGGGGAATAC 12361 36 100.0 38 .................................... AATTACCCACTAGGAAAAAGCCGCCCCTTTTTATTATT 12435 36 100.0 35 .................................... ACCAATAAATCATAAAAAGGATCAGTAGTTCCGAA 12506 36 88.9 0 ..................G.GA...A.......... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 99.2 38 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : TACTTCTGTTAATGCGTTGTGATCTTTCCCCGAATGGTAATTTTCCGAGGGATCGAGGGTTTGATAACCGACTCCGGGGTGTCGGACGAGGGTGGCGATCAGGAGCATAAGTCGCTGGAACTCGCGACTATCTCGTTCACGCAGTGTTCTTTCCCTAGGGGATTTGGGGTGCTGAGTCATACAGATGCAATCGGTTCAGTCAAGGGGAAAGCCGATATAAATTTACTTCACTCCGAGGGCTAGAAAATCCGATCAGGACTGGAAAAATCAGCCGCTCGATCGAGGGGTTAAATTATTGGCTTTTTAGGGTATCATCGACTAGCGACCGACAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACTGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCTGAACCTCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : CCCGCTTTAAATTTTGGATTGAAATTTTGTGTTTATCTCTCTACTAGCGCTTAGACATTAGCCTCATCTCAACAGACGATTTAAATGCGCGGGCAGCTTATTCTATATGGTAATGTTTAATTGTATTCCCACAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTACTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTGAGTCTAGCCGAGCATTTAAGCAAAGGAACGAAATCCTGTCAAGAATTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGAGAGCATTAGCTAGTGTGGGAATTTTTCAAGAAACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCAATTATGTTAGGAGAAGCCCCCCATTATCAAGCCTGGGGAAATGTGTTACATAGTATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3830-2095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVY010000038.1 Microcystis aeruginosa LEGE 00239 NODE_38_length_33570_cov_15.3384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 3829 35 100.0 37 ................................... GAAGTTGATTAACCAAGCGCTGTGCGAAGTTCCTCAA 3757 35 100.0 40 ................................... GAGCTCGGCTTGCTCATCGGTGAGCAAGTCTACAATGAAA 3682 35 100.0 41 ................................... GTTTTGCCGAAAAGAGTAACCGCTGTTTTTGCTTGCGGTAT 3606 35 100.0 37 ................................... GCGATAATTAAGGCAGGGACTTTACTGCCTATTAGAA 3534 35 100.0 36 ................................... GGATGGCTGAGCCCAATTCCATTTTTTTAGACCCAT 3463 35 100.0 33 ................................... CCCTATTTCCAAGTGGCCTCGCTCGTCGTACGT 3395 35 100.0 33 ................................... GACAGAATCAGGAACACTATCTTTTTTTTCATA 3327 35 100.0 35 ................................... TCTATGCGACCGGTTAACATATTCAATCCGAGGTC 3257 35 100.0 45 ................................... ATTGTTTAGAGGAGATGATGCAATTGAAACAGCTAGGTTTTGAAA 3177 35 100.0 40 ................................... AGGAAAAGTAAAGGCTAGGAGTAGGAGTAGACAGACAAAA 3102 35 100.0 39 ................................... CATAAAAAAGTAAAGAAGGCTATCGTGCTTGGTTGCTTC 3028 35 100.0 40 ................................... TTCTACAGCTTTCAAGATGAGTTCATCATCAGAAGCCGTT 2953 35 100.0 40 ................................... GACATTGGGCAAACAGAAGTTGTACTTTATACATTTAGTT 2878 35 100.0 44 ................................... AGCGAATGCAGCATCGATCGCCGTCTCACGACGGGCAATTTCTT 2799 35 100.0 39 ................................... CTTGATGAATCTCAGCATGTCTTTGTCTGGTGCTATAAA 2725 35 100.0 38 ................................... TTAAACTCAGTGTCTGTTCCCATACAGGGCCCACACCT 2652 35 100.0 49 ................................... CTGCAGATAAGTCTGCATTTCTTGTGAAGACTTTAACGACTTTTAACTT 2568 35 100.0 42 ................................... AATATAGGGAATATCACATCTAGCCAATGGCGCCATTTCAGG 2491 35 100.0 36 ................................... GAAAGACCGAACTTGGCTGCCTCTTCTTCAAGAAGA 2420 35 100.0 36 ................................... TCCCCTTTTCTAGCGGCATGGAACGCTAAAAAATAT 2349 35 100.0 38 ................................... ATGTTGGCTGTCTTTTTAAGATCAAGATAACTTATCTT 2276 35 100.0 38 ................................... CTTGTGCCTTTCTGAATAGGTCTGGTAAGCACAAGTGT 2203 35 100.0 39 ................................... AATGTGTAGGGTCAATTCATGAATTAACCCTACAATTTT 2129 35 74.3 0 T..AA........A..T...T.CC.....A..... | ========== ====== ====== ====== =================================== ================================================= ================== 24 35 98.9 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AGGAGGTTTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGGATTATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : GATGCTTAATTAATAAAAATCAATAAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTAAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCAACCACCGGCCCGAGCAGTACCACCTAATTAGCCCCGGACTGCTAAACTTCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAGTCGATAGCGAAATACAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 925-435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVY010000043.1 Microcystis aeruginosa LEGE 00239 NODE_43_length_30257_cov_14.4148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 924 36 100.0 40 .................................... TGGATAGTTTTGCGACTAATTTGACCGTTACGGATGGGCG 848 36 100.0 37 .................................... CTGAGTGACGGGTTTACAAGAACCGGGGGAATTTATA 775 36 100.0 41 .................................... AAAATAACCCTGGGGTTGTTTTAGGTTGTCTGTTTTTACAA 698 36 100.0 44 .................................... TTAAAATCGGCTACGGAATTAGCTCAAGAGTTTGCCTCTTATCT 618 36 100.0 39 .................................... TTCTTTAGGTGCTAAAACTACCCGTACCGGTTATTTAAT 543 36 100.0 37 .................................... TAGCCATTGGGCTGACTGTCAATCTAGTATTCAGACC 470 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 100.0 40 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : CTTCCGCTCGCTTTTGTCCCACTGTTTCCCACGGGACATATTAAGCTGTTCGTAATTTAATTAGCATTTTTATCGATTTTTGTCAAGATATATTTGACACAATTTATTAGAAAAAGGGTTTATAATTAAAGAGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTCTTTATAAACCCTTTTTCTA # Right flank : GAGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAAACCCCCAAATCGACGCACCTGCAAAAAGAGGGTTAAAAAGTGGTCCTGGGGGGGGTAAAAGTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACGCACCTCAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTGGGGGACAAGCTAGATGATGTAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAATAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTGGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAATTGTCTAGCTACTGATTAGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //