Array 1 25413-23432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANV010000007.1 Corynebacterium ulcerans strain 4290 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25412 29 100.0 32 ............................. AGCTTCTTCAATCAGCTCGGCCCGCTCTTCCA 25351 29 100.0 32 ............................. ATTGCGAGCCTCCTTAGCGGATCACCGATGGA 25290 29 100.0 32 ............................. GCGAAAAGCGCCCCTTCAAAAAAATGAAAGGG 25229 29 100.0 32 ............................. CGCATCGAGGCATTAGAAAAAGGAGCCTCCAC 25168 29 100.0 32 ............................. CCTATCGAACGCTATGCCGTTTCGATCAATCA 25107 29 100.0 32 ............................. TATCGAACGGGCAGGTCAGGCAGGTTAATGGT 25046 29 100.0 32 ............................. CAATCGCATGAAATCAATAGCCCCCATGTTTG 24985 29 100.0 33 ............................. CCATTACTTTTTCTCCTTAGGAATTTAGGTTGA 24923 29 100.0 32 ............................. GCCTTTTTCGCCGCGTCATCGGCGAGATAGAA 24862 29 100.0 32 ............................. CTCACGCATTTTCGCCAGCGTCGGATCAAAAT 24801 29 100.0 32 ............................. GGCAATATCTTTTTTCTTGATCTTCACTTTCA 24740 29 100.0 32 ............................. AGTGCGATCAGGATCAACCGTGGACAACGCCG 24679 29 100.0 32 ............................. CTATTACTTTTGTGAGCAAGGGAACCCCTAGG 24618 29 100.0 32 ............................. GGCACCCTCGACCCCCGCATCAAAGCCGCACA 24557 29 100.0 32 ............................. GAATGCTGCGAAGCGGTCGTTGGCGAGTGCCT 24496 29 100.0 32 ............................. CAGTAATACCAGCAGACGCGGCAGCAAAACCC 24435 29 100.0 32 ............................. CAAACTCATGCCCGTGATCGTGCCCCGTAAGA 24374 29 100.0 32 ............................. ACCTGGCGTGGGGCAATGGCTTATGCGGATGA 24313 29 100.0 32 ............................. TGTGGCCCGCTCACGGTGATAGCGGTGGCGGA 24252 29 100.0 32 ............................. TGAAAAATTTTTCCGTGATTTCATCACCGGCT 24191 29 100.0 32 ............................. AAAGAAGATCTCCAGCGGGTAAGTGAAGATGC 24130 29 100.0 32 ............................. GACTGCCGCTATCACCGGCGAATCACAAAGAT 24069 29 100.0 32 ............................. AACACGCGCCCGCCCTAACCCTCATAAGATTT 24008 29 100.0 32 ............................. AGCGAATATACGAACGCTCACATGTTCGAGTC 23947 29 100.0 32 ............................. CCGGAGCCTCAAGAAGCTGATCTGGCGAAAGG 23886 29 100.0 32 ............................. CCCATCACGCCGCTTAGGTGCTCAGCCTTCCG 23825 29 100.0 32 ............................. TCGCTGGGCTGGTGGAGCAAGCCCGCACTGCG 23764 29 96.6 32 ............................T TCGTTGAAGCGGTCAAGACCGAGGCTCTGTCT 23703 29 100.0 32 ............................. CTCCCCTGTGGCCTCCCACTTTTTCACAACTT 23642 29 100.0 32 ............................. CTCCCCTGTGGCCTCCCACTTTTTCACAACTT 23581 29 100.0 32 ............................. CGACCCACAGGTGTGGGAAGCGCTGCGTGAGC 23520 29 100.0 31 ............................. TGGGCCGATGAAAGCAGGTCCGGCTGCCCAA 23460 29 82.8 0 .CC.........C......G........A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGTTCAACATCAAGGATCTGTACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGTGCTTCATCTTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCCATCACACCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATCGCTAGGAAATACGGGGTTACTCGTCAATACATCTTTACTCTTGCCAAAAGGGGAGGGCATCAGGCCTCTGCGCAAGAGTACATCAAAGATGATTTACCGTGGGCAAACGTCCCTGACAAGCATTTTAATAACACGATACTTTCAGGTTTGAGGATCCACGCCCGTTATATGGAGCGTGGGCAAGAGGGCTTGCGCGGTTCGAGTTGCGTTAAACTACTCGGCATGTACCGAAAACTCGTTCGATTCAATCAGGTTATCGACTACGACGAGTCCTATCCACCTGTAGAAGGTTTGTCGAATACAGGCGGGTTTATGTATGTACCGAGGTCTCCAGAGGACGGGAACCTCATTATCAAAATGAAGCCCGGTGTGCGGATCACAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 150129-152843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANV010000005.1 Corynebacterium ulcerans strain 4290 contig00005, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 150129 29 100.0 32 ............................. GCATCCATCCGCCACGACTGATTTGCACCACA 150190 29 100.0 31 ............................. AGGCAAAAACATGAGCTCCGAAAGCATATCC 150250 29 100.0 32 ............................. TTGACGGCTGGCTCAACAAGGGGATTATTTTG 150311 29 100.0 32 ............................. GCATCCATCCGCCACGACTGATTTGCACCACA 150372 29 100.0 32 ............................. CACCAACAACCAGCCGATCTCCTACCCACTCT 150433 29 100.0 33 ............................. GACAAACACCAGGCGGCGTGCATCGCCACGACC 150495 29 96.6 33 A............................ GACAAACACCAGGCGGCGTGCATCGCCACGACC 150557 29 96.6 32 A............................ GGGATGGTCTCCTGGTTGATGGGGTGGAGCCC 150618 29 100.0 32 ............................. GGGATGGTCTCCTGGTTGATGGGGTGGAGCCC 150679 29 100.0 32 ............................. GCTTTAGGGTGGGGTGCAGTAAAATAAAACAT 150740 29 100.0 32 ............................. TTCTTTCGCTAAAAACCGGGAGAACAACCACG 150801 29 100.0 32 ............................. TCGCCTGCAGATTGCCGACCATGCCTTCAAAC 150862 29 100.0 32 ............................. CATCAGCTGCGCGGAGAGTCAAACTTGCAACA 150923 29 100.0 32 ............................. GAACAATCACCCCAACCACCACTACTACAGCG 150984 29 100.0 32 ............................. TCACCCACATTGGGGCACCAACTGCCATGCCC 151045 29 100.0 32 ............................. AGCGGGGGAGGGCTTTCAAGGCTTCTGCTTCG 151106 29 100.0 32 ............................. ACACCGTCTGACCAGCAAGAATGCACTGATTC 151167 29 96.6 32 A............................ ATAGCGCTAATGCCACGGCTATCCAGACCACT 151228 29 100.0 33 ............................. CCTAAACCACGCGAAATCTTCCCTAATGATCCC 151290 29 100.0 32 ............................. ACCCATCACACGATAGGTACACTACTAGCCCC 151351 29 100.0 32 ............................. GGCGCTTCTTGACGTAGCCCTTCATTGACTGC 151412 29 100.0 32 ............................. TGATTGCTTCACCGGTAAAAGCACCTGTATAA 151473 29 100.0 32 ............................. AGACACGCTGGAAGTCATTGGTGAGCCTCGAA 151534 29 100.0 32 ............................. AGTTGGATCAGGATTTTTAAAGGTTACCCCCT 151595 29 100.0 32 ............................. TCGCGGGAAAAGATCGAAGAAATCATTGATGG 151656 29 100.0 32 ............................. GCATTGCAAGACAAATGAGCAGGACGAAGATT 151717 29 100.0 32 ............................. ATCAATTTGTTCCTCGATGACGGGGATGCCGA 151778 29 100.0 32 ............................. TTTGCGAGACGAACATCAATCGCACGATCCGA 151839 29 100.0 32 ............................. CGCGTAGACGCGGGTGGAATGCGGAAAACGCA 151900 29 100.0 32 ............................. CGCTCACAGCTAGGACGGCGAGGCCCGCGCTG 151961 29 100.0 32 ............................. TCTGACGCGCCGCCTCGACGAAGAAGAAAAGG 152022 29 100.0 32 ............................. TCGGTGAGGGAATCACCATCACGCAGTGGCGG 152083 29 100.0 32 ............................. CCCCGGCGATGTACTGGCCATTGCCGTCCTTG 152144 29 100.0 32 ............................. TAATGCCCACTTGCTGGCCGGGCCTGCCAGAC 152205 29 100.0 32 ............................. TGGAATCGCATTTGGCTTCACGCCGCCAAGAC 152266 29 100.0 32 ............................. GGCCTTCCTGGATACCTTTGGGAGAAATGGAC 152327 29 100.0 32 ............................. CACCTGCTTTGCCGAAATTCGCATCACCGCGA 152388 29 100.0 32 ............................. CGCGCCGGGCAAATATGTATTCACGCGAACCT 152449 29 100.0 32 ............................. CCGACGACGACGCCAAGGACAATGCCGAAGGG 152510 29 100.0 32 ............................. GGAGGGTGCTAATCCACATGGGTGGGGCGGTG 152571 29 100.0 32 ............................. CCACCGTTGACTTTGTTCCAGAGGTACAAAAT 152632 29 100.0 32 ............................. CCGCATCAGGGGTGAGTTTTTGGAAAAAAATA 152693 29 100.0 32 ............................. ACATACACACGGGTAGTGGTGGAGGTGAGCTC 152754 29 100.0 32 ............................. CGTTCGAGGTGAAAAAGTCTGTTACCACGATG 152815 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCGCGAAAAACCGTTCGGGCTTTTATTTTTTAAAAGGTCGTGTATAGTAAGGATTGGTTTTGGCTAAGGCTCCGGTTGTGGTGACTGGGGCCTTTTCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTCGTCCGCGGATTTCACAACACCATGCTTGACCAGTGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGTTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTCTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 230617-230068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANV010000005.1 Corynebacterium ulcerans strain 4290 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 230616 36 100.0 38 .................................... CCCCGCTAACGCGAGAAATGGCGACCATGTGGCTAGGT 230542 36 100.0 38 .................................... AAGGATTACCCAGATTCCCCAGACAAAATAGACGCTGT 230468 36 100.0 37 .................................... TCACTGACCTTGATATGTAGGGTGACTGTGCGCTGTC 230395 36 100.0 36 .................................... TCTTTCCCAGAGTTTCTGCCATAGATGCGGATATCC 230323 36 100.0 37 .................................... TGGAAAGAAGGCTACATGGGGGAAGAAGGGAATCCAA 230250 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 230176 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 230103 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //