Array 1 338-489 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCYJ01000090.1 Nocardia aurea strain SYSU K10002 s.K1002_Contig3482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 338 30 100.0 31 .............................. CCTCGATCGGAACTATCGCCAGCGGGGGGAA 399 30 100.0 31 .............................. GGAGGCGCCGGGCGAGTCTGACGCAGAGCAG 460 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : GGGCCGCGGCCGAGAGACCACCAACCGCCAGCACCGCGGGGGACGCGCCGTCGAACATGGATCCCATTAAAGACCAGCAACACGGAGAGAATTCACGAATCACAAACTTTTCATCCACGACATCGACGACGACGCCTCCATCCGAGCAACAGCGCAACCCTAAATGTCCCTCAATTATTCAAATGACCGTATTGCGCCAATTTCCGCCATGGGCATGGCCGTATGGAGCTTGTAGACTCGGTGGACACACAAGAGGGCCGATATGACCGAAATGCCAGCATCCGCAAAAGTACTTAATTTCAGCGCTTCCCACGCGTAGCGTCCCAGGTCAGGCAGTG # Right flank : TGATGGAGGTTGAGCAATGGGCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1004-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCYJ01000074.1 Nocardia aurea strain SYSU K10002 s.K1002_Contig2430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1003 30 93.3 31 ............A................A TCCCGAGCGGGAGGTTTGGTGCTGGCGGAAG 942 30 100.0 31 .............................. CGGACTTGGCTGTAACTGTCTGGGCTCTGCT 881 30 96.7 31 .............................T TCGTCACTTGGCCTCCGGTTCCTCCGGCCGC 820 30 100.0 31 .............................. AGAGACCGCCATCCCCGGCCGCGACCCCGGG 759 30 93.3 31 .C...........................G CCGCGCGGATGACGGCGTGAACCCGGCCGAC 698 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATCCAAGT # Right flank : CATCTGCGACCGCTTCACGTCCCGGAGATCGCGTTTGGGTTGACCGTCGGAGAGTGGCTCGGCCTGGCGCCCGCTTGAACCCTCTGACTTGCTGTGCCACACTACGCGCAGGCGGATCCCCTATGCCCTCCAGCAAAACGCGAAGGGCATTACGTGTTTTCGGGGGTGTGCCATGGACCCCGAACCGGTCACCGCTGCCGAGGCCGGCCGACGCCTCGAAAGGGCCCCCGCCACCATCCGGTCCTGGGGCAGCCGCTACCAGGCGCGGAAGCTCGGCAAGCAGCAGCGTCGCATCTACTACGACTGGCATGACCTCGCCACGATCGACGGTTGCATCAACCGCGGCGAGGAGATCCCAGCCATGCCCGAGCTGCGCGATCAACTGCGCGCCGAGCTACGGCAACGCTGGCGCATCGTCTCCTAGCTGACCTTGAACCGTTCAATCCGGCCAGGTGCTTTTCGTCCGCCGCTCTGATCATCCAGCAGCTGACCGGCGGTAG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //