Array 1 939412-931804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018332.1 Acinetobacter baumannii strain A1296 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 939411 29 96.6 31 ............................A AAACTATGCTTTAGCTTTTAGTGATTGTGCA 939351 29 100.0 31 ............................. CGTATCTTTCTGAGTTGCTCTACGACTTGCT 939291 29 96.6 31 ............................A GCCTGTACAAATATTTCAAGAGCATCAAAGA 939231 29 96.6 31 ............................A GCACCAAGATCAGAGGCACCTAGCAATGCAG 939171 29 96.6 31 ............................G TGCAAACTCACTGAACATGAACGAAGGCAGC 939111 29 96.6 31 ............................A GCGCCTTGCTGACATCGAGGCGGCTAAGAAC 939051 29 96.6 31 ............................A GCATGACGATAGGAAATCACGTGTAGCCTGA 938991 29 100.0 31 ............................. CGTTGAACATAACGCACCGTTTCTTTTCTTT 938931 29 100.0 31 ............................. CAACCTATCAAGGTAAGTGACAAAGAGGTAT 938871 29 100.0 31 ............................. TCAGAAATAGATTTAATGCTAAAGGCTTTAG 938811 29 96.6 31 ............................G AGAACAATTTGAGGGGCTGAATCTGCTTCAA 938751 29 96.6 31 ............................A TTACCACTCACCCCCGCTTAACTTCGCACAT 938691 29 96.6 31 ............................A CGCTCGTTGACGCCATCAACTAATTTTTGCT 938631 29 96.6 31 ............................A CTTGACCCGTTATAGATAAATCAGCAATACC 938571 29 100.0 31 ............................. GAATGTAAAATTAGCCGATGAGGCTCATAAA 938511 29 100.0 31 ............................. TTCTTTGGCTCATCATCCGATTGTTCATTCA 938451 29 100.0 31 ............................. TTGGAAACGTTGCTAAAGTTGCTATGGATAC 938391 29 100.0 31 ............................. GCATCCGTGTCAGGATCTTGCAACTGCCAAT 938331 29 100.0 31 ............................. TCATTACCGCTTTGTTGAAGCAAATAAAGCC 938271 29 96.6 31 ............................C TTAGCGTCCATTGCAACTTTAGCAACATTTC 938211 29 100.0 31 ............................. AAAGAAGCACCAGGACCAATCGATTATTTCC 938151 29 96.6 31 ............................A TCAAAATCAAGACCAAAAATTTTCCGAGTAT 938091 29 100.0 31 ............................. AGACAAAGAGCAGCTTTACAACCAAATCAAT 938031 29 96.6 31 ............................A ATCTGTACATTTGGGGAAAAAGCTCGTCCTA 937971 29 100.0 31 ............................. GAAATAACAACGGGCTTATTCTGATCACCTG 937911 29 96.6 31 ............................C TGAGCAAAACAATAACATTTAGACGTTTTCT 937851 29 100.0 31 ............................. ATCACCATCCTCAATCAATCTCCTACAGTCA 937791 29 96.6 31 ............................A GTTAAAAGAATTTGGATTGCATATTCTTTTT 937731 29 96.6 31 ............................A AAGTAGCGGAGTACTACGACATGTTAAAAGC 937671 29 96.6 31 ............................A GCAACACGGCAATATGTTGGGATGTGGGACG 937611 29 96.6 31 ............................A TGTAATGCGAGATATTAAGAAAATCATTAAG 937551 29 96.6 31 ............................A GCCCCCATTACACGCGGGACGATATGAATAG 937491 29 100.0 31 ............................. TGTTCATGTCGCACATAACGATAAATCTTTC 937431 29 96.6 31 ............................A TCATCGTAAGCATTGAATCGCGTGCCTTCAA 937371 29 100.0 31 ............................. TTAAAGCCCCTTTTTAGGGGCTTTTTTATGC 937311 29 100.0 31 ............................. TTATTTGGCTTTGCATTTAAATCCTTTACTC 937251 29 96.6 31 ............................A TTCTGCCCGCTTCCGAGACCATAATCATGAC 937191 29 96.6 31 ............................A TCCAGTCATATCAACATTCGGATTGACTGTA 937131 29 96.6 31 ............................A TCATATAACGCGCTTCAACTTGAGCCTTTGC 937071 29 96.6 31 ............................A ATCCCGAAGATGGCGAAATTAAGGTAGTCAA 937011 29 100.0 31 ............................. GTAGATGGACTTTGGTGTGACTTAAATATTC 936951 29 100.0 31 ............................. TTTCGGGCATTAAAAAGCCCTCGAATTGAGG 936891 29 96.6 31 ............................A ATCAAGGCAACCCCTAGTCCAGTAGATAAGC 936831 29 100.0 31 ............................. TTACTGGAATTGAGCAAAATCGTATTCAATA 936771 29 100.0 31 ............................. TAACCACTACCGCATTTGCTGCTGCAAGTTC 936711 29 100.0 31 ............................. TGCGTTCCACTGTTTTATTGATTTTTATGTC 936651 29 96.6 31 ............................A GCTTGTAGATGATGGCAAAGGTGGTCAAGAG 936591 29 96.6 31 ............................A AAAAAAGAAACAATTGAAGTTTCAGAAGTTG 936531 29 96.6 31 ............................A TTTTCATGACGACAAGCCCATTGGGACCAAT 936471 29 96.6 31 ............................A GAAAGCGCTTGGATTGGATATTGCGGTTATC 936411 29 100.0 31 ............................. TCGGCTAATTCAAATTTAACTCGATTTTCAA 936351 29 100.0 31 ............................. ATCGACTTACCTGTTCTACTGATCACATCCA 936291 29 100.0 31 ............................. TCAGAAATAGATTTAATGCTAAAGGCTTTAG 936231 29 100.0 31 ............................. AGCAAACTCGGAGGAAGCTTGGAATTTAGTT 936171 29 96.6 31 ............................A GCAAAGTCCGCAGAGGGAGCGTTTGTTAATG 936111 29 100.0 31 ............................. CTGGAATGCCTGCCTCAAGCAAGCCATCTAA 936051 29 100.0 31 ............................. TTCTTATGCTGCTGATAACTTTGAGCTGGAC 935991 29 96.6 32 ............................C TGAAAAGCAATAAACCCACTCAGTAAAGTGGG 935930 29 96.6 31 ............................A ACAGTGGAAAGATCGCACGGTAAAAATTTTG 935870 29 100.0 31 ............................. AACTGCCAATCAAAGGATATTTGAGATGGAT 935810 29 100.0 31 ............................. TTTAGGGCGCTCATTGCTAGCGTATCTTGCA 935750 29 96.6 31 ............................A CTCAGTAAAGTGGGTTTATTTGGGTTTAAGT 935690 29 96.6 31 ............................A TCTTGGTTTTGATCTTGAGTAGTATCAACCT 935630 29 100.0 31 ............................. AATCGCTGCAATTCATTGACAATATCGTCAA 935570 29 100.0 31 ............................. CCGTATATTGATTCGTAATCAGCAATTGCTT 935510 29 100.0 31 ............................. GTGCCCAAGATACTATCATTGTCGCCACGTT 935450 29 96.6 31 ............................A ATGATGCCGCCGATATTGGTGTGAATCCACG 935390 29 96.6 31 ............................C GTAATCGCCGTGAGAGAGTCGAGCACAAATT 935330 29 96.6 31 ............................A CAAGACGCTTGAGGTCAGCCATGTTCACAAG 935270 29 100.0 31 ............................. CTTTGAAAGTACCGTCCCACATCCCAACATA 935210 29 96.6 31 ............................A AACCGACAAAACAAGGTGAATAATCTAGTCC 935150 29 96.6 31 ............................A ATACTGCAAACATTTTTCTAGATGGTGAATA 935090 29 96.6 31 ............................A ACATTCTCCGCCCAGCAAATAATTGCTTTGA 935030 29 100.0 31 ............................. TGCCGCGTGGGTAATGAACTGCTTTTTGTAC 934970 29 96.6 31 ............................G TAATCGAATTAGTTGCTCATAATGTCGAAAG 934910 29 100.0 31 ............................. TCTGGGTTCGGCTCTAATTCCGAAAGCTCTA 934850 29 96.6 31 ............................G ATTGTTCTGCCTTGCCGGGAAGCTTCATTAA 934790 29 96.6 31 ............................C AATTTTCTTGCGCAGCTTCTTCTGCATTAGC 934730 29 100.0 31 ............................. CTAAGGTGCTGCTTGAAGTGCTGAATAGGTT 934670 29 96.6 31 ............................A ATTAAGCAAGATATTCAAAATACGAAAGATC 934610 29 96.6 31 ............................A CTAGATCCAGTGTTAATCTGCCAAGTGAAGT 934550 29 96.6 31 ............................A GAGTCTGCCCCGATCAATCCTTCAGATCCGA 934490 29 96.6 31 ............................G AAAGAGCGATTTCTTGTGTGGGCATCAATTC 934430 29 100.0 31 ............................. AACCCTATATGCTTATGAGCCACCGATTTAA 934370 29 96.6 31 ............................A CAAGAAATAGCAGCAGGCCACCGCATTGATA 934310 29 100.0 31 ............................. TCTGCGGCTGCTTTGGAGTGGTTATTGTTCA 934250 29 96.6 31 ............................A AACATTTTACACAGATCAAGCAGCGGGATTT 934190 29 100.0 31 ............................. ACGACAAAAAGGCTAAAAGATACGTTATTAA 934130 29 96.6 31 ............................A GTAGTTAGCAACTCATGGAAGGTTTCCATAC 934070 29 96.6 31 ............................A AACTCAATAGCAGTGGCGTAAGGCGCATTCG 934010 29 100.0 31 ............................. TGTTGTGTTGAAGCGTAATGATGTGAAGGAT 933950 29 100.0 31 ............................. TTATGGTCATCAAAGAATGCTTTGATTTGCA 933890 29 96.6 31 ............................C CGAAAAGCACGCTTTTCATGTTCAGTGTGCC 933830 29 100.0 31 ............................. TCATCCAAACTTTAAGCGGCGTATGAGTAGA 933770 29 100.0 30 ............................. GTCCTTAGCGGCAGGTTTTTTATGCCTGAA 933711 29 96.6 31 ............................A ATGGAGCACGATAACCACAAGGTTCATAAAC 933651 29 100.0 31 ............................. GAATGTAGAGACGCAAGGAGGGAAGTTAAGG 933591 29 100.0 31 ............................. CAACATTGTAGGCGCGACTATTGGCTTCTTT 933531 29 96.6 31 ............................A TCATCACTTGATTTCTTGACCGTTTCTACAA 933471 29 96.6 31 ............................A AGCACCCCCGTTTGGACAATGAACAGCAAAG 933411 29 96.6 31 ............................C ACGCATGTCGGAAGCTCGGCTTTTTATCTAC 933351 29 100.0 31 ............................. TTAACTCCAGATGCTACCAATAAGCCAGTAC 933291 29 93.1 31 ..........A.................A CATGGGAGCTTTCATTCATATATGTCATTAG 933231 29 100.0 50 ............................. GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGGATTTGGCGCTC 933152 29 89.7 31 ....G.......CC............... CACATCACTGATGCACAACAACTATTTTCTG 933092 29 82.8 31 ...GC.......CC..............A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 933032 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 932972 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 932912 29 93.1 31 ....C.......G................ TAAATGCTCAACTACTTCTGTAGCTAATGGA 932852 29 89.7 31 ...GC........C............... CTCAACTCATTGATTTTTTCTTCTCTTGCCA 932792 29 89.7 31 ...GC.......................G TGTTTTTCGATATGCTTCGAAAGGTCATCCT 932732 29 82.8 31 ...TC.....A.CC............... GATGGTTCAGCATATATAGCTAGACGTACAC 932672 29 82.8 31 ...GC......TG...............A TCACCAAACACAACCAAAGGTGAACGGGTAT 932612 29 86.2 31 ...GC.......CC............... TATCTGCCATACCCGACTGCTTTGTTCCTAA 932552 29 89.7 31 ...GC.......................A TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 932492 29 89.7 31 ...GC......T................. TCAAATGATTTAATGAGCTTGTAGCCATTTT 932432 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 932372 29 79.3 30 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTT 932313 29 82.8 31 CG..G.......CC............... TTATAACCACCAGTTAAAGTATTGACTAAAA C [932308] 932252 29 72.4 31 ...GC.G...A..C.AT...........A CAATCGGGGTCGTGGTCAAAAAGATTATCAG 932192 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 932132 29 79.3 31 ...GC....T..TC..............A TTAAAGCATTTTCATATGAGCCTTCCTCATT 932072 29 82.8 31 ...TA......TCC............... TCGGATCAGTCCAGTCATCATCCTCGTCAAT 932012 29 86.2 31 T..GA.......G................ ATCATTGCGCGACAGAACGCATCAATTAATG 931952 29 82.8 31 ...GC.......CC..............A GATCTATGCAAGATTTATTGGTCTACATTAG 931892 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 931833 29 86.2 0 .G..G...................AT... | C [931828] ========== ====== ====== ====== ============================= ================================================== ================== 127 29 95.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTAATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAGAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGCAGTAAAATCAAATAAAATCATACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGTCAATTGAACTCAAAACCTAAACATCTAATTTTAATAAAATTTTCTACTATTTAAAAAATTATTTACCCATTTTGTACCCAAATTAGATTTAGTGCATTGAATACGAGAACTAATTTTGTTCAAATCCATATTTAGGATTTGAACTTGTGTACGCATTTTAACATATTTCACAGAAATAAAATGTAATGATATATCATTACATTTTGTGCTATTTCTTTTTCATGTATCATTCATTCCAACACACTCAGGGATAAGGTCATGTTTGAAACTATTGACGATTTGAAGACAAAGTTAGATCAGCATCGTCCTCTTTCCCCTACAATTGTAAAAAATCTACAAGAAGACCTTATTGTCCGTTGGACATATCACTCGAATGCGATCGAAGGCAATACACTTACCTTGCTTGAAACAAAAGTTGTTCTAGAAGGT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [80-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 944501-948308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018332.1 Acinetobacter baumannii strain A1296 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 944501 28 100.0 32 ............................ AACAGGGATTTCATTAACCCATGTGGCATTGT 944561 28 100.0 32 ............................ AAGAGCAGAGGGGTTATCGGCATGTACTGATA 944621 28 100.0 32 ............................ AGAAACTGGCAATAAAAAAAGCACCCGATTGG 944681 28 100.0 32 ............................ TTTATTTTCACAAGACAAATGTGATCCTAATG 944741 28 100.0 32 ............................ ATGTACGACGGTGGCTCATTAGGTGCCATGGG 944801 28 100.0 32 ............................ ATGAAACTAATCCTTGATGTTGAAGTGCCGCT 944861 28 100.0 32 ............................ AACAACTCAGCAAGTTGATGCCGAATTTATTG 944921 28 100.0 32 ............................ TTCTTACGAGGCTGTGCCGACGAGCAACACGT 944981 28 100.0 32 ............................ AGAAACATGGCCATTTACATCGAACTTAGTAA 945041 28 100.0 32 ............................ TTCAAAATCGATAGGGTTAGATAACTCGAAAG 945101 28 100.0 32 ............................ TCAAGCTCAAGCAACAAGGTGTCTACAGTGAT 945161 28 100.0 32 ............................ TACCTCAGTGCAATATCCTTGTGAATTATAAG 945221 28 100.0 32 ............................ ATAACTTGTCCATTGATGTTCTGTATAAATCT 945281 28 100.0 32 ............................ GAAAGATCAAGACCGTAGCTATTTTCTTTGTC 945341 28 100.0 32 ............................ ATTACTACCAAAAGTAACTTCAAAAGATCGAA 945401 28 100.0 32 ............................ TTGGCGAAGATGAACAGCACTATGTAGGGAGA 945461 28 100.0 32 ............................ AGATTATTGAGCAAATAATTGCACATTAGTAA 945521 28 100.0 32 ............................ TGGTTTAGCTCAATCGGCTGTTTATTCTTATG 945581 28 100.0 32 ............................ TCAGAGTTGCCGTAAACAATACGAATACGCTG 945641 28 100.0 32 ............................ TATTATTTACTCATGCGTTTACAGTGCATGAA 945701 28 100.0 32 ............................ AACAGTTTGTCCGATTAACTTTCCCATATTTC 945761 28 100.0 32 ............................ AAAGTCATTTCTTCAGTGCGGTAGGATACCGA 945821 28 100.0 32 ............................ TGGGTCTGTCACGCCGTGGTTATGCTCTGGCA 945881 28 100.0 32 ............................ ATTCTCTAACCCTGTGTGATAAAAGCCATTCG 945941 28 100.0 32 ............................ TTATCAATCATCTCCTTAAGCTGCGGTGTACC 946001 28 100.0 32 ............................ CAAACCCAACATTACAAGAATGGCTAGATTTT 946061 28 100.0 32 ............................ TCAAAATCGATTGGATTGGACAGCTCGAAAGT 946121 28 100.0 32 ............................ TGAAAGTAGGCAACTTTAGAGAGTGAATTTGA 946181 28 100.0 32 ............................ TGAAATTGAGCACATCAAAAATATAATGTTAA 946241 28 100.0 32 ............................ ATCATGAGCACAGTGCTCCGATCGGACAGGTC 946301 28 100.0 32 ............................ AGGAAGAGATTGAACAGGGTAAGGCTGTGCCG 946361 28 100.0 32 ............................ TAATATCACCTGACGATCTTGTAGCGTTTATC 946421 28 100.0 32 ............................ TGCATTGTAGGCCATGAGTGCTTTATCCATGG 946481 28 100.0 32 ............................ AATATCGTTGCGCTTCGCAAGATTTTCACTAG 946541 28 100.0 32 ............................ TGGAACGTTTTCCCAAACAATGATGGCTGGCT 946601 28 100.0 32 ............................ AGAAAGTTGACACGCTCTATCGTGAATATGAA 946661 28 100.0 32 ............................ AAGCAGCTTTGAAAGATTCCCAACCACGAACA 946721 28 100.0 32 ............................ TCTTCCATAGACTGGTAATACTCAGGGCTTAA 946781 28 100.0 32 ............................ TGTTGAAAGCCAAGGTTTTGAGAGCCACACCA 946841 28 100.0 32 ............................ ATTCAGGGACTAATCAGAAGCGTCGTGAGTGC 946901 28 100.0 32 ............................ CGCTTTTGCAGCTTCAGCATGTTTATGCCTTG 946961 28 100.0 32 ............................ ATGAGTGAGTTTAAAGTCGGGGATCAGATTGT 947021 28 100.0 32 ............................ TTTGGATATTGGATTGATGCGCGAAATCTTGG 947081 28 100.0 32 ............................ TTCGGCTTCAGAACCTCCGCCGATTGATCCGA 947141 28 100.0 32 ............................ TTACGAGATAAACGCAAATTTTAGGTCACTGG 947201 28 100.0 32 ............................ AATGATGTTGAAAGTGATTGATGGATATATTT 947261 28 100.0 32 ............................ ATACTCGTTCTTATAAGCCACAGTAGCAACGT 947321 28 100.0 32 ............................ TTATGCGCGAAAACCTTTTGTGTTTAAGGGCT 947381 28 100.0 32 ............................ TTTCAAGAACCATGTCTTCAACATAGATTGTA 947441 28 100.0 32 ............................ AACTACGACAAGCGATTGTTAGGCATCCTTCG 947501 28 100.0 32 ............................ ATGCTTAAAATGTCGGATGCGATGGAATTGCC 947561 28 100.0 32 ............................ GGCACAGGCATTGCTGAACCGAACGGAGTTAA 947621 28 100.0 32 ............................ AGCAGGCAAAATATTTTTCTCTGGTGATGCCA 947681 28 100.0 32 ............................ AGTGCATGTCGATGTAATTATGTTTATGCTTG 947741 28 100.0 32 ............................ TTTCAAGAACCATGTCTTCAACATAGATTGTA 947801 28 100.0 32 ............................ AACACGAACCACACCGCTTGTAATCGTAATGT 947861 28 100.0 32 ............................ TTTAACTTCGCCCCCCTCGCGTGTCATCTCTT 947921 28 100.0 32 ............................ AAGTAGGCAATGCTAGAGGTATCCTCAAAGGT 947981 28 100.0 32 ............................ TTGTACAAGCGTATTGAATGTGCCCTCATCAA 948041 28 100.0 32 ............................ ATCATTGTTTTAAGTGATTCCCAGTGCTGACC 948101 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 948161 28 100.0 32 ............................ TTAAGTGGTGTTATCAAAATGAGCAATGATTC 948221 28 100.0 32 ............................ AATTAAGCACTATCGACACGTTACAAACTAAG 948281 28 92.9 0 .........A.................G | ========== ====== ====== ====== ============================ ================================ ================== 64 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ACTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACAGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //